CI01000013_08139954_08212837 (SRGAP1A, SRGAP1)


Basic Information

Item Value
gene id CI01000013_08139954_08212837
gene name SRGAP1A, SRGAP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8139954 ~ 8212837 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_08139954_08212837.mRNA
GAAATTCGAGCCCAACTGGTGGAACAGCAGAAATGTCTGGAACAGCAGACAGACATGAGGGTCCAGCTCCTTCAGGACCTCCAGGACTTCTTCCGCAAGAAGTCCGAGATCGAGATGGAGTACTCACGCAACCTGGAGAAGCTTGCCGAGCGCTTCATGGCGAAGACCAGGAGCACCAAGGACCACCAGCAATATAAGAAAGACCAGAATCTCTTGTCTCCGGTGAACTGCTGGTACCTGTTGCTGAACCAGGTTCGACGGGAGAGCAAAGACCATGCGACATTGAGCGACATTTATCTGAACAACGTCATCATGCGCTTTATGCAGATTAGTGAAGACTCCACACGTCTTATGAAAAAGAGTAAAGAAATCACCTTTCAGCTGCAAGAGGATTTGATGAAAGTCCTCAATGAGCTCTACACGGTGATGAAAACCTACCATATGTATCACACGGAGAGCATCAGTGCCGAGAGTAAACTGAAAGAGGCAGAGAAGCAGGAGGAAAAGCAGATCGGACGTGTTGGAGATCCTGTCTTTCACATTCGACTAGAGGACAGACACCAGAGACGGAGCTCTGTGAAGAAGATTGAGAAGATGAAGGAGAAGAGGCAAGCCAAGTATTCTGAGAACAAGCTGAAGTCGATCAAAGCTCGGAACGAATACCTGCTGACGCTCGAAGCCACTAATGCTTCAATCTTCAAGTATTACATTCACGACTTGTCTGATTTAATAGACTGTTGTGATCTGGGATATCATGCCTCTCTGAACCGAGCTTTGCGGACCTACCTCTCGGCTGAATATAACCTGGAGACATCTCGTCACGAGGGCTTGGACATCATTGAGAACGCAGTGGACAGTCTGGACCCCCGTAGTGACCGCCAGCGTTTCATGGAAATGTACCCTACCGCGTTCTGCCCACCCGTCAAATTTGAGTTCCAGCCACATATGGGAGATGAGGTGTGTCAGATCACGGCCCAGCCTCCTGTGCAGGCAGAACTCCTCCTAAGGTTCCAGCAGCTGCAGTCCCGCCTGGCCACCCTAAAGATCGAGAACGAAGAGATCAAGAAGACCTCAGAGGCCACTCTCACTACCATCCAGGACATGGTGACCATCGAGGACTATGACGTGTCGGAATGTTTTCATCACAGCCGCTCCACTGAATCGGTCAAGTCCACTGTGTCGGAAACCTACCTCAGCAAGCCGAGCATCGCCAAGAGACGCGCCAACCAACAGGAGACGGAGCAGTTCTATTTTATGAAGTTCCGTGAATATCTAGAGGGCAGCAATCTCATCACTAAGCTACAGGCAAAGCATGATCTACTGAAGAGGACCCTTGGTGATGGTATTGTTTGCCTTTCTCTCTTTCTTCTTTCCTCCAAACATAGGGACTCTGGACAAGCAATACCTCGAGTTGTTGAGAGCTGTATTCGATTCATCAACCTATATGGCCTCCAACATCAAGGAATATTCAGAGTGTCTGGATCTCAAGTTGAAGTCAATGATATCAAGAACTCATTTGAGAGAGGTAACGATCCTCTGACAGACGAAGAGAATAACCACGATATAAACTCTGTTGCGGGTGTTTTGAAACTTTACTTTCGAGGTTTGGAGAACCCTCTGTTTCCAAAGGAAAGATTCAGTGATCTCATCTCCTGTATCAGAATAGACAATCTGTATGAGAGAGCGCTGTATATTCGAAAGATCCTTCTCACTGTACCTAGATCAGTGCTTGTGGTCATGCGATATCTGTTCGCCTTCCTCAACCACTTGTCCCAGTACAGTGATGAAAACATGATGGACCCCTATAATCTGGCCATCTGCTTTGGCCCCACCCTCATGCCCACTCCAGAAACTCAGGACCAGGTCTCCTGCCAGGCCCATGTCAATGAGGTCATCAAAACCATCATCATCCACCACGAGACCATCTTTCCTGACTCAAAGGAGCTTGACGGCCCCCTGTATGAGAAGTGTATGGCTGGTGGAGATTATTGTGAGAGTCCATACAGTGAACATGGAGCTCTTGAGGAGGTTGATCAAGATGGAGGAATTGAGACCCACACCAGTGAGGATGAGGGGGAGCCCATTGAAGCCATCGCAAAATTTGATTATGTGGGGCGCTCTGCGCGGGAGCTGTCCTTTAAAAAGGGTGCGTCTCTGCTGCTGTACCAGAGAGCGTCAGATGACTGGTGGGAGGGCAGACACAATGGCATAGACGGTCTAGTGCCTCACCAGTACATTGTTGTGCAGGATATGGATGACACATTCTCTGACACACTCAGTCAGAAAGCAGACAGTGAGGCCAGCAGTGGACACGGAGGAGAGGAGAAATGCTCCAGTAGGGACATTGGATCTCCAACGGACAGCAGACTACCTGATGCCTACATCAGCAGCAGGCACAGGAAGAGAAGTGACCCTCCGACCCGTAGGCCCCCAGCTCGCCCCACTGACGCCCACTGCATGGTCCACCCCTCTCAGGGCCACCACGGTAACCATAGCAGCCACGGTAGTCACGGCACCCCAGATTTGGGATCCCCGGTAATGGGCCACTACAGTCCGCGGGATCTGTTGAGAGGAAGAGGACACGTGCCCATGGACAGCCCCGAGAGACGCAGACGGACCGGCCACGGCAGCCTGACCAACATCAATCGGCATGAGTCCTTGAAAAAGATGGAGAGCCCTCCCATCCGTAGGTCCACGTCTTCAGGCCAGTACACGAGCTTCTCCGAGCCTCACGGCAAGAGCCTGGATCCAGAGAGCATCGCACAGGACATAGAGGAGACGATGAACACTGCTCTGAATGAGCTGAAGGAGTTGGAGCGGCAGAGTTCTGCTAAACACGCTCCTGACGTGGTGCTGGACACCCTGGAGCAGATGAAGAACGCTCCCACACCGGCCAGCTCCACCGAGTCCCTCAGTCAACTCCATGGCCTCATGCTGCGGCCCGCCGCCACGGAGCCGCCCATGCGCCGTAGCACCAGCTCCTCTAGCGATACCATGAGCACCTTCAAACCCGCCGTGGCCCCGCGCATGGGGGTGCAGCTCAAGCCCCCCGCCCTGCGCCCCAAACCCATGGTGGCGATACCCAAGACGGGAGCGACGCAGCATCCGGCGCCCCCTCCACAGGATCCACTGGACAAATCCTGCACCATG

Function

symbol description
srgap1a Predicted to be involved in negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human SRGAP1 (SLIT-ROBO Rho GTPase activating protein 1).
srgap1 Predicted to enable small GTPase binding activity. Predicted to be involved in negative regulation of cell migration. Predicted to act upstream of or within Rho protein signal transduction and cell migration. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Implicated in thyroid gland papillary carcinoma.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K07526 SRGAP; SLIT-ROBO Rho GTPase activating protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_08139954_08212837.mRNA True 3150 mRNA 0.52 19 8139954 8212837

Neighbor

gene id symbol gene type direction distance location
CI01000013_08107786_08113703 NA coding upstream 26223 8106676 ~ 8113731 (+)
CI01000013_08101166_08105054 TMEM5 coding upstream 34740 8101166 ~ 8105214 (+)
CI01000013_08095012_08097899 CS012 coding upstream 41421 8095012 ~ 8098533 (+)
CI01000013_08066408_08071727 KLHL36 coding upstream 67982 8065209 ~ 8071972 (+)
CI01000013_08013515_08013676 NA coding upstream 125188 8013515 ~ 8014766 (+)
CI01000013_08216673_08226743 PARP12A, PARP12 coding downstream 3762 8216599 ~ 8227774 (+)
CI01000013_08336335_08399543 HIPK2 coding downstream 123498 8336335 ~ 8399621 (+)
CI01000013_08402498_08414755 NA coding downstream 188965 8401802 ~ 8416190 (+)
CI01000013_08448494_08481411 NA coding downstream 234438 8447275 ~ 8482911 (+)
CI01000013_08485928_08493559 NA coding downstream 272564 8485401 ~ 8493623 (+)
G82178 NA non-coding upstream 52938 8083578 ~ 8087016 (+)
G82184 NA non-coding upstream 62652 8074660 ~ 8077302 (+)
G82146 NA non-coding upstream 80129 8011261 ~ 8059825 (+)
G82157 NA non-coding upstream 123588 8015253 ~ 8016366 (+)
G82339 NA non-coding upstream 186958 7952768 ~ 7952996 (+)
G82162 NA non-coding downstream 15890 8228727 ~ 8230128 (+)
G82155 NA non-coding downstream 39876 8252713 ~ 8305402 (+)
CI01000013_08652173_08660558 NA non-coding downstream 396187 8652173 ~ 8661156 (+)
G82453 NA non-coding downstream 487779 8700616 ~ 8700839 (+)
G82503 NA non-coding downstream 621235 8834072 ~ 8846060 (+)
G82168 NA other upstream 98611 8028338 ~ 8041343 (+)
G81994 NA other upstream 801715 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 2057587 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 2080458 6049864 ~ 6060269 (+)
G80845 NA other upstream 3303722 4835078 ~ 4836232 (+)
G82581 NA other downstream 1116492 9329329 ~ 9334948 (+)
G84005 NA other downstream 1388774 9601611 ~ 9602235 (+)
G84194 NA other downstream 1817771 10030608 ~ 10036953 (+)
G84215 NA other downstream 1863617 10076454 ~ 10079336 (+)
G84250 NA other downstream 2002290 10215127 ~ 10215962 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013285 srgap1a coding NC_007129.7 CM002902.2 12867400 ~ 13056801 (-)
bowfin (Amia calva) AMCG00006857 NA coding CM030134.1 CM030134.1 23207193 ~ 23282722 (+)