CI01000013_08336335_08399543 (HIPK2)


Basic Information

Item Value
gene id CI01000013_08336335_08399543
gene name HIPK2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8336335 ~ 8399621 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_08336335_08399543.mRNA
GTATGGCCTCGCAAGTGCAAGTCTTCTCCCCTCACACTCTCCAGTCAAGTGCCTTCTTTAGCGTGAAGAAACTGAAGGTGGAGCAGAGTTGCAACTGGGATATGACAGGGTACGGCACGCACAGCAAGGTCTACAGTCAGAACAGCAAGCAGAGTGTCTCAGTCGCCCCAGTGGGCATCAACGCCGCCAGTCTCCAGGTCTCCAACTCTTCCCTGTCCTACGAACAGGCCCTCCTCTTCCCGGCCGGCTCGGGGCACATTGTGGTGGCCTCGGCCAGCAGCACATCTGGGGCGGCTGGTCAACTGTTGGGCAGCACCGGTAGTAGCGGAAGCGGCAGCGGAGGCCACAATCTGACGCGCCGCAGCACCGTCAGTCTGCTGGACACGTACCAGCGATGCGGGCTTAAGCGGAAAAGCGAGGAGCTGGACAACAACAACGGCAGCGGGAGCAGCGTGCACGTGGTTGAGGAGCAGCAGCCGCCTGCACCCATGATCCAGAACAACACGCAGAGCGGGGCCACCGTCGCGACAGCGACCGCCTCCACCACAGCGACGTCCAAGAACAGCGGCGCCAACAGCGAGGGCGACTACCAGCTCTTGCAGCACGAGGTGCTTTGCTCCATGACCAACACCTACGAGGTGCTGGAGTTCCTTGGTCGAGGGACGTTCGGGCAGGTGGTGAAGTGCTGGAAACGTGGCACCAGTGAGATCGTGGCCATCAAGATCCTCAAGAACCACCCTTCGTATGCGCGGCAGGGCCAGATCGAAGTGAGCATACTGGCTCGGCTGAGCACGGAGAGCGCGGATGACTACAACTTCGTTCGAGCGTACGAGTGCTTCCAGCACAAGAACCACACGTGCCTGGTCTTCGAGATGTTGGAGCAGAACCTGTACGACTTCCTTAAGCAGAACAAGTTCAGTCCGTTGCCGCTCAAGTACATCCGACCGATCCTGCAGCAGGTGGCCACTGCCCTCATGAAGCTCAAGAGCCTCGGACTGATCCACGCCGACTTGAAACCTGAGAACATCATGCTTGTAGACCCAGCCCGCCAACCCTACAGGGTCAAGGTCATCGACTTTGGCTCTGCTAGTCACGTCTCCAAAGCGGTGTGCTCTACCTACCTGCAGTCTAGATACTATAGAGCTCCAGAGATCATCCTGGGTCTGCCCTTCTGTGAGGCCATAGACATGTGGTCCCTGGGTTGTGTCATTGCTGAGCTGTTTCTGGGCTGGCCGCTGTACCCCGGAGCATCTGAGTATGACCAGATCCGGTACATCTCTCAAACGCAGGGCTTGCCAGCAGAGTATCTGTTAAGTGCAGGGACGAAAACAACCAGGTTTTTCAACAGAGACCCCGACTCCACCTATCCTCTATGGAGACTTAAGACACCTGAGGACCATGAGGCAGAGACGGGGATCAAATCTAAAGAGGCTCGCAAGTACATCTTCAACTGCCTGGATGATATGGCACAGGTGAATATGACCACAGACTTGGAGGGCAGCGACATGCTGGCGGAGAAGGCCGACAGGAGGGAGTTTATTGACCTGCTGACCAAGATGCTGACCATCGACGCAGACAAGAGAATAACGCCCATAGAGACACTCAACCACCCCTTTGTCACAATGACACACTTGCTGGACTTCCCACACAGCACACACGTCAAATCCTGCTTCCAGAACATGGAGATTTGCAAGCGTCGGGTGAACATGTACGACACAGTCAATCAGAGCAAGACGCCCTTTATAACACATGTAGCCCCTAGCACCTCCACCAATCTCACCATGACTTTCAACAACCAGCTTAACACTGTGCATAGCCAGTGCAGTTTAGCTTCACCAGGGAACGTTTGTCTAAACTGCTGACAGAGGGCCAGGCATGAATCCCATAATTCCTTCATTTTGAGTTCTTTGATCGGCTCAAAACACAACTTTCCCCTTCGA

Function

symbol description
hipk2 Predicted to enable SMAD binding activity; protein kinase activity; and transcription corepressor activity. Predicted to contribute to transcription coactivator activity. Acts upstream of or within convergent extension and regulation of melanocyte differentiation. Predicted to be active in cytoplasm and nucleus. Predicted to colocalize with PML body. Is expressed in notochord. Orthologous to human HIPK2 (homeodomain interacting protein kinase 2).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08826 HIPK; homeodomain interacting protein kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_08336335_08399543.mRNA True 1940 mRNA 0.56 7 8336335 8399621

Neighbor

gene id symbol gene type direction distance location
CI01000013_08216673_08226743 PARP12A, PARP12 coding upstream 108561 8216599 ~ 8227774 (+)
CI01000013_08139954_08212837 SRGAP1A, SRGAP1 coding upstream 123498 8139954 ~ 8212837 (+)
CI01000013_08107786_08113703 NA coding upstream 222604 8106676 ~ 8113731 (+)
CI01000013_08101166_08105054 TMEM5 coding upstream 231121 8101166 ~ 8105214 (+)
CI01000013_08095012_08097899 CS012 coding upstream 237802 8095012 ~ 8098533 (+)
CI01000013_08402498_08414755 NA coding downstream 2181 8401802 ~ 8416190 (+)
CI01000013_08448494_08481411 NA coding downstream 47654 8447275 ~ 8482911 (+)
CI01000013_08485928_08493559 NA coding downstream 85780 8485401 ~ 8493623 (+)
CI01000013_08519555_08527531 FAM107B coding downstream 119489 8519110 ~ 8527711 (+)
CI01000013_08530191_08551478 NUP205 coding downstream 129728 8529349 ~ 8551621 (+)
G82155 NA non-coding upstream 30933 8252713 ~ 8305402 (+)
G82162 NA non-coding upstream 106207 8228727 ~ 8230128 (+)
G82178 NA non-coding upstream 249319 8083578 ~ 8087016 (+)
G82184 NA non-coding upstream 259033 8074660 ~ 8077302 (+)
G82146 NA non-coding upstream 276510 8011261 ~ 8059825 (+)
CI01000013_08652173_08660558 NA non-coding downstream 209403 8652173 ~ 8661156 (+)
G82453 NA non-coding downstream 300995 8700616 ~ 8700839 (+)
G82503 NA non-coding downstream 434451 8834072 ~ 8846060 (+)
G82526 NA non-coding downstream 510776 8910397 ~ 8910626 (+)
G82557 NA non-coding downstream 582602 8982223 ~ 8982501 (+)
G82168 NA other upstream 294992 8028338 ~ 8041343 (+)
G81994 NA other upstream 998096 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 2253968 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 2276839 6049864 ~ 6060269 (+)
G80845 NA other upstream 3500103 4835078 ~ 4836232 (+)
G82581 NA other downstream 929708 9329329 ~ 9334948 (+)
G84005 NA other downstream 1201990 9601611 ~ 9602235 (+)
G84194 NA other downstream 1630987 10030608 ~ 10036953 (+)
G84215 NA other downstream 1676833 10076454 ~ 10079336 (+)
G84250 NA other downstream 1815506 10215127 ~ 10215962 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013280 hipk2 coding NC_007129.7 CM002902.2 12464461 ~ 12654011 (-)
bowfin (Amia calva) AMCG00006867 hipk2 coding CM030134.1 CM030134.1 23491010 ~ 23492095 (+)