CI01000013_08652173_08660558


Basic Information

Item Value
gene id CI01000013_08652173_08660558
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8652173 ~ 8661156 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_08652173_08660558.mRNA
AATTTCCATTGAGAATTCTATACTGCCTCCTGTCTCCACACTCATGGCTCCAGAGAAGACTAGTGATGGGCTGGACAACTATGCATTTACTGTTGATGGTGTAGACCGCTTCTGTGAGTTACCAGAAAATACAAACAGAAGAAGTAGTTTTTCAGAGGAGGGAGACAGTAACAAGCTAGCATATTGTGTCACAGATATTCCACCATGGTACCTTTGCATCTTTTTGGGGATTCAGCACTATCTTACAGCCTTTGGTGGCATCATAGCCATTCCTCTGATATTGTCTCAGGGCCTTTGTCTACAGCATGACGGCCTCACGCAAAGTCACCTAATCAGCACTATTTTCTTCGTGTCTGGGTTGTGCACCTTACTGCAGGTCACTTTTGGAGTGAGGTTACCCATTCTCCAGGGTGGAACGTTTACGTTCCTTTCGCCCACCATGGCTTTGCTTTCAATGCCTGAATGGACCTGTCCAGCCTGGACACAAAACGCCAGCCTGGTCAACACCACCTCACCCGAGTTCATAGATGTTTGGCAAAGTCGAATGCAAGTTCTCCAAGGCTCAATCATGGTGGGCTCCCTATTCCAAGTGCTGGTGGGATTCTCCGGTCTCATTGGCCTCTTCATGCGTTTCATTGGCCCTTTGACCATCGCACCTACTATTTCACTAATCGGCCTATCGCTGTTTGACTCCGCTGGCATGAATGCAGGACACCATTGGGGCATCTCTTCCATGACGACGTGTTTGATTGTGATATTCTCGCAGTACCTCCGTCATATTGCCATCCCTTTCCCCAAGTACAGCAAAGCCAAGAAATTTCACACCACCAAGATTTACATATTTCAGATTCTGCCTGTCCTGCTAGGTATCAGTCTGTCTTGGTTGATTTGTTACCTGCTGACGATCTACGATGTCCTGCCCTCAGACCCTGACAAATATGGCTATCTAGCTCGGACTGACATTAAAGGAGACGTTACCGGCAGGGCGCCTTGGTTCAGATTTCCTTATCCAGGTCAATGGGGAGTGCCAACTGTTAGTCTGGCAGGAGTTTTTGGAATCCTGGCAGGAGTCATATCATCAATGATTGAGTCAGTGGGTGATTATCATGCCTGTGCCAGGCTATCTGGTGCTCCACCTCCACCTAGACATGCCATCAATAGGGGCATTGGCATTGAAGGCATTGGGTGTCTGCTGGCAGGTGCCTGGGGCACAGGTAACGGAACCACCTCCTACAGTGAGAACGTAGGAGCCTTGGGGATCACCAAGGTTGGTAGTCGCATGGTGATTGTGGCCAGTGGCTTTGTAATGATTATAATGGGAATGTTTGGGAAAATTGGAGCCATATTTACTACAATACCAACGCCTGTCATTGGAGGAATGTTTCTAGTCATGTTTGGGGTCATTATGGCTGCTGGTGTTTCAAGCCTACAGTATACAGACATGAATTCTTCACGGACCATCTTCATCTTTGGATTCTCCATGTTCACTGGGCTTACTATTCCTAACTGGATAATGAAAAACCCAACATCTATAGCCACAGGAGTTGTTGAACTGGACCATGTGCTTCTAGTGCTTCTGACAACCAGTATGTTTGTTGGAGGATTCTTTGGATTTCTGCTCGATAACACAATACCTGGAACGAAACGCGAACGGGGCATTATTGCATGGAACAATGCCCACCAAAATGAGTCAGACAACACTGTAGAAAGTGATGACGTGTATGGGCTGCCCTTTGGAATTACTACCTGCCTCTCTTCCTTCAGGTGGACCAAATATGTGCCATTCTGCCCTACACACAAAGTCAGCACACAGGATGACCCACCATCCAGTCTGGATTCTTTGGACACCAAAACAGAGCCTAACAAAGATGATGCACACATCATAGTGGGGGTGGCATTATAGTCTGTGATGGAGACTTCCATCTTAAATCAAGAGACAATTTAGTCTAAAGTAAAAAGGCTCCTAATTCTGTGATATAGTCGTATTCAGAGTCATATTCAATTCTCTGTCATATTGAGGTACGGACTGAACTGAGAAGGCAGCTACCCCCACATTCATAATTTAATATCTAATCTGAAGCAGTACTGCTCAAATATATCTCTCTATTTTATGAATTATCTGTAAAGATAATGTTAATGAGTAATGGGTAACACTTCACAATAAGGTCTTATTAGATAATGTTAGTAAATTCATTATTTAACTTACAATGAGCAATACATTTGTTACAGGATTTATTTTTTAATGTATTAGCAAATGTTGAAATTAACATTAAGATTAAAAAATGCTTTACCTTTTTTTTTTTTCATTGTTAGTTCATGTTAACTAATGAATTAATGTTAACTAATAGTACCTTATTGTAAAGTGTTACTGATTAATGTTTTTCTTTTCTTAATGGTGCTCTAGGGGTGATTTCAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14611 SLC23A1, SVCT1; solute carrier family 23 (nucleobase transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_08652173_08660558.mRNA False 2416 mRNA 0.43 12 8652173 8661071

Neighbor

gene id symbol gene type direction distance location
CI01000013_08530191_08551478 NUP205 coding upstream 100552 8529349 ~ 8551621 (+)
CI01000013_08519555_08527531 FAM107B coding upstream 124462 8519110 ~ 8527711 (+)
CI01000013_08485928_08493559 NA coding upstream 158550 8485401 ~ 8493623 (+)
CI01000013_08448494_08481411 NA coding upstream 169262 8447275 ~ 8482911 (+)
CI01000013_08402498_08414755 NA coding upstream 235983 8401802 ~ 8416190 (+)
CI01000013_08925040_08937556 CRACR2A coding downstream 263490 8924561 ~ 8938923 (+)
CI01000013_08943859_08944315 NA coding downstream 281767 8942838 ~ 8944625 (+)
CI01000013_09075883_09113011 NA coding downstream 414754 9075825 ~ 9113283 (+)
CI01000013_09178561_09180465 NA coding downstream 516036 9177107 ~ 9195268 (+)
CI01000013_09243644_09260619 TSPAN9A, TSPAN9B, TSPAN9, TSN9 coding downstream 582573 9243644 ~ 9260619 (+)
G82155 NA non-coding upstream 346771 8252713 ~ 8305402 (+)
G82162 NA non-coding upstream 422045 8228727 ~ 8230128 (+)
G82178 NA non-coding upstream 565157 8083578 ~ 8087016 (+)
G82184 NA non-coding upstream 574871 8074660 ~ 8077302 (+)
G82157 NA non-coding upstream 635807 8015253 ~ 8016366 (+)
G82453 NA non-coding downstream 39545 8700616 ~ 8700839 (+)
G82503 NA non-coding downstream 173001 8834072 ~ 8846060 (+)
G82526 NA non-coding downstream 249326 8910397 ~ 8910626 (+)
G82557 NA non-coding downstream 321152 8982223 ~ 8982501 (+)
G82168 NA other upstream 610830 8028338 ~ 8041343 (+)
G81994 NA other upstream 1313934 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 2569806 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 2592677 6049864 ~ 6060269 (+)
G80845 NA other upstream 3815941 4835078 ~ 4836232 (+)
G82581 NA other downstream 668258 9329329 ~ 9334948 (+)
G84005 NA other downstream 940540 9601611 ~ 9602235 (+)
G84194 NA other downstream 1369537 10030608 ~ 10036953 (+)
G84215 NA other downstream 1415383 10076454 ~ 10079336 (+)
G84250 NA other downstream 1554056 10215127 ~ 10215962 (+)
G82146 NA non-coding upstream 549199 8011261 ~ 8059825 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013274 zgc:110789 coding NC_007129.7 CM002902.2 12034985 ~ 12052132 (-)