CI01000013_08925040_08937556 (CRACR2A)


Basic Information

Item Value
gene id CI01000013_08925040_08937556
gene name CRACR2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8924561 ~ 8938923 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_08925040_08937556.mRNA
CTATAAATTCGGGGTCTCTTTTGTCACAGCTCTCTAGCGATTGAAAGCAGATTCCTCTGTGGTTTCTCCTCTTTAATATCATTTTCTATCAATGTAGCAATTTATGAAAATTCAGCTAACATGTAAAATGAGCTGTAAAAGCAGTGATACTTTCTCTGAATGGACAGTTTATGGCCATCTGTAACCTACAAACATAACCTGTCTAAATATACACATTTTGACGCCTTCTCTCAATCTGTCTTTCTGTCTTTTTAATGCTCTTTCTTTTCCTGTGCCCATCTCAGTGCCCTCGTTGTCTAATTAAAGAGATGGTTGCTAAGAGATGGCGCTCGGCGCCGCTTTAAGAGGATGTGATGTGGTGTAACTCAAAAGCTTTGTTCTCTCTCTCTACTCTTCTCTTCTGTCAAGGGCTGACCCATGTGAGAAAGGAGAGTTCGCATACACATACATACGCACACACAAACACACACATGGATGCCATGGCATCTTTCTCCACCTTCAACACCTGTGGCTCCAAGGTGGATCGGGCGTCCCATCGTAGGGGAGAAGACAGGCAGGGGACGCCCAGTGACAACGACTGCAGTGCTGTGCTTGAGAAGACCAGAGAGTTCTTCCAGATTTGTGACATAGAGGGCAAAGGCTTCATTACACGACGGGATATGCAGAGGTTAAATGGAGAGCTTCCTTTGAGTGCTGAGGAACTTGAGAACGTCTTTGACACTTTGGATGCGGATGCCAACGGATATCTGACCTTTGAGGAGTTCTCTTCTGGCTTTAGTTGTCTGTATCATTTATTTACTAATGTGTTTGTCTATCCAGGTGAGTTTATGTTTGGCTCTGGTGTGGCATCAGTAGAGCTGCTTGCAGGTGAGGAGCTGGTCTCAAGAAAGACTCCGGAAGTGCTCTATGAGAGCCAATGGGAGGAGAGAATCAGCAGGGCAGGGGAGGAGAGAATCAGCAGGGCAGAGGAGGACGAGGAGAAACACTTCTGCATGCTAATGGAGAACCTGGGGGCGAGCAACATCTTTGAAGATCCAGGAGAGGTGCGGAGTCTTTGGGCCCAGCTCAGAAGAGACGAGCCTCACCTCCTGTCCAATTTTGAGGAGTTCCTTGCCAGGGTCACTTATCAGATCAAAGAGGCCAACCAGGAGAAGAAAGAGATGGAGACTGCTCTTAAAAGCTTTTTGAATGATCCTGACATCTTTAATAGGAAAGTGGCGACGCATGATGATGAAATCCAGAGGCTGTATGAAGAAATGGAGCAACAGATCAAGAATGAGAAAGACAGGATACTCTTAGAGGATTCCGAGCGGTTCTTGTCTCGCAGTCAAGACTTGGAGCACCAACTTTCCACTAAGGAGAAAGAACTGGAAATGCTTTCTAACAAACAGAAACGGCTGGAGCGTCAGTGTCGAGAGCTGCACAGTGAGCAACGAGAGACAGCCGTAGAGAACGTCAAACTCAAACAGTATAATGAGGACTTGAGCCGTGAGCTGGAACATACCACCCAGGAGCTGAGCCTGGCCCAGGAGCAACTCATGCTGCTGCAGGAACAGTCCTCACGCCTGCATGACGAGCGAGAGATGGAGATTTATAGGGTTACAGAAAGCCTGCAAAGAGAGAGGTCAAGTCTTCTCAAGCAGCTTGATTTGCTAAGGGAAATGAACAAACATTTACGAGATGAAAGAGACATGTGCTATCAAAAACCAAAGACCTCTGCTGCAAAACTCTCATGGACACAAAAGTCTGGATCAATTGTTCTGAATCACGCTGAGCGGAAGCAGTCATTCAAGAGTGACGAGGATGAAGAAGTTCTGCCTCATTCTAAGCGGAAAACCACAATTGGTGTAAATGGGCACAGCATGGACCTTGAGGACATAGCAGATGGGCGACCTCATTCAAAACACCAGCTCCAGAGGATCATCTCAATCGAGGAGGACCCCCTCCCCCAACTCCTTCAGCAGGGTTATCAGGCCCAGCTCAGAGAATGGAGCGAAGATGAGGAGTTGGAGGAGGGCATTGATCTCCAGATGAGCAATATTTACCCCACAACCAGCACTCCAACCTCTGTTTCACCACCTCTAGGAGTCTCACACACGCCCACCTCACCCAGGGGACAGCCTGTGGGCAAAGAGACAGTCCAGTCGACTGACTTCTTTCATTTGTGTGATGTGTGTGCAGGTATTGACTACAGTGTGAAGACTCTGACAGTGGACAACAGCCAGGTAGCCCTTCAAATGTGGGACACAGCAGGACAGGAGAGGTATCGCAGCATCACCAAGCAGTTTTTTCGCAAGGCCGATGGTGTGGTAGTGGTGTATGACATCACTAATGAGCAGACTTTCACAGCAGTGAGGCAGTGGCTGGCCAGCGTGCAGGAGGGAGCAGGTGAGGACATTCCCATCATGCTCTTGGGGAATAAGACTGATCTAGATGGCCAGAGAGAAATTCCACTGGGAACAGGAGAGAAATTAGCCAAGGTGAGTGAATCTGGGCCCTGGAGTGGCACTCATGGATCACCATTAAACATTTTAAGCATTGCGCTCTTGAAATGTAAAAGAACTGACTCAGACATGGAGAATCAGTTTGTAGTTTGATGAGATGTATGAAGTGGTTTCCTGTCAGTTACTGTTTTACGTACTCAGCAGACATTAAGAACCATACTGAATGACCCTTTATTCTAACATACCTTATTTTGTCATTTTATTCACTTTTTCAGGACTTTCAATTGATTTTCTATGAGTGCAGTGCTTTTTCAAACCACAATGTGACAGAGTCCATGATTCACATGGCAAGGTAAGAGTTTATTGTTACAATTTATTGTAGTGTTACACATTATGTACTTACTGTAGTAATAACAGTAATTTATGCATAATTACAAGCAACTTACTCTAAACCAAACCCTATTCCTAACCCTATAGTAAGTACATGTTGTTAATTGATATTACTCAGTACGTAAATGTATAATTGCACTGTAACAAGGACACCTTTGTAACCGAGTTTATTAACAAATTTTTTATATGACTAACTTCTTTTAAAATCACAATATACAACGATCAGGCATAACATTATGACCACTGACAGGTGAAGTGAATAACACTTATTATCTCTTCATCATGGCACCTGTTAGTGAGTGGAATATATTAGGCAGCAAGTGAACATTTTGTCCTCAAAGTTGATGTTTTAGAAGCAGGAAAAAAGGGCAAGCGTAAGGATTTGAGTGAGTTTGACAAGGGCCAAATTGTGATGGCTAGATGACTGGGTCAGAGCATCTCCAATACTGCAGCTCTTGTGGGGTGTTCCCTGTCTGCAGTGGTCAGTATCTATCAAAAGTGGTCCAAGGAAGAAACAGTGGTGAACCGGCAACAGGGTCATGGGCGGCCAAGGCTCACTGATGCACGTGGGGAGCGAAGGCTGGCCAAAGGGGGACCAACATAATGTTAGGAAGGTGGTCATAATGTTATGCCTGATCGGTGTAGACGAGTGTTTTTAAAACATTTTGCAGTTTAATCTGGTCAAGAACCGCCCTATTCACACAGAACGCGTTTTTGCATTTAACTGCGCAGAATTTCCTTGGTTTTTCTATGTAAACATACGCTAGATGGATGTATTTGACATTTGTGCCCGCGTTTCATGCATGATACACTGTTCTGCAAATGCGGCGCTTAAGCTTAAAGAATTTGCGTCTCTAGACCTTACTGTTTTTTTGTTTGTTTTTTTTTTTCATTCTCTACTGCCCTCAAACGCAAAAATGCATTTCGTGTGAACGGGCCCCATAGACAGGAAATGACTGCCTGACAACCACAAAACAAACAACCAACCACAGTTTGTTTCATTTTTACGTGTTTGGTGCCGGGTTTGTCTGTAATCTATGATACCACAATAATAGATTGGTATTTAAAAAATGGCGCAGAGTTCCTGGTTGTCGAACAGTTCTATAGAAAATATAAAATAAGAATGAAAA

Function

symbol description
cracr2a Enables GTPase activity and calcium ion binding activity. Involved in several processes, including activation of store-operated calcium channel activity; positive regulation of JNK cascade; and store-operated calcium entry. Located in several cellular components, including Golgi apparatus; Weibel-Palade body; and immunological synapse.

NR:

description
ras and EF-hand domain-containing protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_08925040_08937556.mRNA True 3964 mRNA 0.45 14 8924561 8938923

Neighbor

gene id symbol gene type direction distance location
CI01000013_08652173_08660558 NA coding upstream 263490 8652173 ~ 8661156 (+)
CI01000013_08530191_08551478 NUP205 coding upstream 372940 8529349 ~ 8551621 (+)
CI01000013_08519555_08527531 FAM107B coding upstream 396850 8519110 ~ 8527711 (+)
CI01000013_08485928_08493559 NA coding upstream 430938 8485401 ~ 8493623 (+)
CI01000013_08448494_08481411 NA coding upstream 441650 8447275 ~ 8482911 (+)
CI01000013_08943859_08944315 NA coding downstream 3915 8942838 ~ 8944625 (+)
CI01000013_09075883_09113011 NA coding downstream 136902 9075825 ~ 9113283 (+)
CI01000013_09178561_09180465 NA coding downstream 238184 9177107 ~ 9195268 (+)
CI01000013_09243644_09260619 TSPAN9A, TSPAN9B, TSPAN9, TSN9 coding downstream 304721 9243644 ~ 9260619 (+)
CI01000013_09279917_09290301 TSPAN33B coding downstream 340994 9279917 ~ 9290760 (+)
G82526 NA non-coding upstream 13935 8910397 ~ 8910626 (+)
G82503 NA non-coding upstream 78501 8834072 ~ 8846060 (+)
G82453 NA non-coding upstream 223722 8700616 ~ 8700839 (+)
G82155 NA non-coding upstream 619159 8252713 ~ 8305402 (+)
G82557 NA non-coding downstream 43300 8982223 ~ 8982501 (+)
G82612 NA non-coding downstream 126210 9065133 ~ 9074576 (+)
G82620 NA non-coding downstream 198060 9136983 ~ 9138445 (+)
G82638 NA non-coding downstream 298065 9236988 ~ 9237208 (+)
G82168 NA other upstream 883218 8028338 ~ 8041343 (+)
G81994 NA other upstream 1586322 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 2842194 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 2865065 6049864 ~ 6060269 (+)
G80845 NA other upstream 4088329 4835078 ~ 4836232 (+)
G82581 NA other downstream 390406 9329329 ~ 9334948 (+)
G84005 NA other downstream 662688 9601611 ~ 9602235 (+)
G84194 NA other downstream 1091685 10030608 ~ 10036953 (+)
G84215 NA other downstream 1137531 10076454 ~ 10079336 (+)
G84250 NA other downstream 1276204 10215127 ~ 10215962 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013272 CRACR2A coding NC_007129.7 CM002902.2 11556620 ~ 11595567 (-)