Gene
RNA
| Item | Value |
|---|---|
| gene id | G82178 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 8083578 ~ 8087016 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| Sp2 protein |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU93531 | True | 1948 | lncRNA | 0.40 | 5 | 8083578 | 8087016 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_08066408_08071727 | KLHL36 | coding | upstream | 11606 | 8065209 ~ 8071972 (+) |
| CI01000013_08013515_08013676 | NA | coding | upstream | 68812 | 8013515 ~ 8014766 (+) |
| CI01000013_07970614_07989626 | CMIP | coding | upstream | 93822 | 7970614 ~ 7989756 (+) |
| CI01000013_07929832_07935997 | GAN | coding | upstream | 147581 | 7929832 ~ 7935997 (+) |
| CI01000013_07791141_07802608 | NA | coding | upstream | 280868 | 7790704 ~ 7802710 (+) |
| CI01000013_08095012_08097899 | CS012 | coding | downstream | 7996 | 8095012 ~ 8098533 (+) |
| CI01000013_08101166_08105054 | TMEM5 | coding | downstream | 14150 | 8101166 ~ 8105214 (+) |
| CI01000013_08107786_08113703 | NA | coding | downstream | 19660 | 8106676 ~ 8113731 (+) |
| CI01000013_08139954_08212837 | SRGAP1A, SRGAP1 | coding | downstream | 52938 | 8139954 ~ 8212837 (+) |
| CI01000013_08216673_08226743 | PARP12A, PARP12 | coding | downstream | 129583 | 8216599 ~ 8227774 (+) |
| G82184 | NA | non-coding | upstream | 6276 | 8074660 ~ 8077302 (+) |
| G82146 | NA | non-coding | upstream | 23753 | 8011261 ~ 8059825 (+) |
| G82157 | NA | non-coding | upstream | 67212 | 8015253 ~ 8016366 (+) |
| G82339 | NA | non-coding | upstream | 130582 | 7952768 ~ 7952996 (+) |
| G82338 | NA | non-coding | upstream | 130923 | 7952441 ~ 7952655 (+) |
| G82162 | NA | non-coding | downstream | 141711 | 8228727 ~ 8230128 (+) |
| G82155 | NA | non-coding | downstream | 165697 | 8252713 ~ 8305402 (+) |
| CI01000013_08652173_08660558 | NA | non-coding | downstream | 522008 | 8652173 ~ 8661156 (+) |
| G82453 | NA | non-coding | downstream | 613600 | 8700616 ~ 8700839 (+) |
| G82503 | NA | non-coding | downstream | 747056 | 8834072 ~ 8846060 (+) |
| G82168 | NA | other | upstream | 42235 | 8028338 ~ 8041343 (+) |
| G81994 | NA | other | upstream | 745339 | 7335945 ~ 7338239 (+) |
| CI01000013_06076169_06080164 | NA | other | upstream | 2001211 | 6075400 ~ 6081684 (+) |
| CI01000013_06050285_06059640 | NA | other | upstream | 2024082 | 6049864 ~ 6060269 (+) |
| G80845 | NA | other | upstream | 3247346 | 4835078 ~ 4836232 (+) |
| G82581 | NA | other | downstream | 1242313 | 9329329 ~ 9334948 (+) |
| G84005 | NA | other | downstream | 1514595 | 9601611 ~ 9602235 (+) |
| G84194 | NA | other | downstream | 1943592 | 10030608 ~ 10036953 (+) |
| G84215 | NA | other | downstream | 1989438 | 10076454 ~ 10079336 (+) |
| G84250 | NA | other | downstream | 2128111 | 10215127 ~ 10215962 (+) |
