XLOC_013330 (mgat4c)


Basic Information

Item Value
gene id XLOC_013330
gene name mgat4c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16387745 ~ 16590056 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026351
ctttttaaactgtattttcaACTGGTGTTAAAGTACCTGGATAAGATGAGGTGTTTCCGAAAACGGTCCACCATTCCTTTCCTGGTGGCTCTCATTACCTTCCTGCTCTTCATAAACCTCTACATCGAGGACGGCTACGTGCTGGAGGAAGATAAACGTCAGCTGCGAGAAACCTCAATGCATCCGCTGAACTCAGAGCGATATGTTCACACCTTTAAAGACATCACCAATTTTTCTGGAACAATCAATGTGACTTATCGGTACCTCGCAGGAACACCTTTACCCAGAAAGAAGTATCTCACCATTGGATTGTCATCTGTGAAAAGAAAGCGAGGAAATTACCTGTTGGAGACCATTAAGTCTATTTTTGACCAGTCAAGCTATGAGGAGCTCAAAGAGATCATTGTTGTTGTCCACCTGGCAGATTTCGACCTTGCGTGGTGTGAAAGCCTAGTTCAAGAAATCTCCAGAAAGTTCGGCCACCATATCATTGCGGGACGGCTGCTTGTAATCCATGCACCTGAGGAGTACTACCCATCCCTGGATGGTTTGAAGAGAAATTACAATGATCCTGAGGATAGAGTTCGCTTCAGGTCCAAACAAAACGTAGATTATGCCTTTCTGCTCAACTTCTGCACCAATCTATCAGACTTCTACATGATGCTGGAGGACGATGTGCGCTGCTCCCGAAACTTCCTCACCGCCCTAAAGAAAGTTGTGGCGTCCCGGGAGGGTTCATACTGGGTGATGCTGGAGTTCTCCAAACTGGGCTACATAGGAAAGCTGTACCACTCACGAGACCTTCCCAGACTTGCTCATTTTCTGCTCATGTTCTATCAGGAGATGCCTTGCGATTGGCTTCTTATCCATTTCAGAGGCCTCCTGGCCCAGAAGGATGCCATTCGCTTCAAGCCTTCGCTTTTCCAACACATGGGCTACTATTCCTCGTATAAGGGGGCAGAGAACAAACTCAAGGACGATGACTTCGAGGAAGACTCCCTCGATATCCCAGACAACCCACCTGCTAGTTTGTACACAAACATAAATGTATTTGAGAGCTATGATGCTGCCAAAGCATACAGTAGCGTGGACGAGTACTTTTGGGGCAAGGCACCGTCCACCGGGGACTTTTATGTTATAGTATTCAACAAGGCGACAAAAATCAGTAAAATCAAGATCATCACGGGAACCGATGATCGCCAGAATGATATTCTGCATCATGGAGCTTTGGAAGTTGGAGAGAAGTTAATAGGAACCAAAAAGGGAAGGCAGTGCTCCTCCTATATAACTTTAGGAGAGTTCAAAAATGGAAACATTGAGGTTCACGATGTGGACCACAAGATAGCGTTTGATATCGAGTGCGTTCGCATTGTGgtaacagccaatcagaaggaATGGCTTATCATTAGAAGTATAAGCCTCTGGACTACACAAGGTGCCAGTCAATGA
>TCONS_00026352
CTTTTAAGTTTCTATTCTGATTTTGACTTCAAACTGGTGTTAAAGTACCTGGATAAGATGAGGTGTTTCCGAAAACGGTCCACCATTCCTTTCCTGGTGGCTCTCATTACCTTCCTGCTCTTCATAAACCTCTACATCGAGGACGGCTACGTGCTGGAGGAAGATAAACGTCAGCTGCGAGAAACCTCAATGCATCCGCTGAACTCAGAGCGATATGTTCACACCTTTAAAGACATCACCAATTTTTCTGGAACAATCAATGTGACTTATCGGTACCTCGCAGGAACACCTTTACCCAGAAAGAAGTATCTCACCATTGGATTGTCATCTGTGAAAAGAAAGCGAGGAAATTACCTGTTGGAGACCATTAAGTCTATTTTTGACCAGTCAAGCTATGAGGAGCTCAAAGAGATCATTGTTGTTGTCCACCTGGCAGATTTCGACCTTGCGTGGTGTGAAAGCCTAGTTCAAGAAATCTCCAGAAAGTTCGGCCACCATATCATTGCGGGACGGCTGCTTGTAATCCATGCACCTGAGGAGTACTACCCATCCCTGGATGGTTTGAAGAGAAATTACAATGATCCTGAGGATAGAGTTCGCTTCAGGTCCAAACAAAACGTAGATTATGCCTTTCTGCTCAACTTCTGCACCAATCTATCAGACTTCTACATGATGCTGGAGGACGATGTGCGCTGCTCCCGAAACTTCCTCACCGCCCTAAAGAAAGTTGTGGCGTCCCGGGAGGGTTCATACTGGGTGATGCTGGAGTTCTCCAAACTGGGCTACATAGGAAAGCTGTACCACTCACGAGACCTTCCCAGACTTGCTCATTTTCTGCTCATGTTCTATCAGGAGATGCCTTGCGATTGGCTTCTTATCCATTTCAGAGGCCTCCTGGCCCAGAAGGATGCCATTCGCTTCAAGCCTTCGCTTTTCCAACACATGGGCTACTATTCCTCGTATAAGGGGGCAGAGAACAAACTCAAGGACGATGACTTCGAGGAAGACTCCCTCGATATCCCAGACAACCCACCTGCTAGTTTGTACACAAACATAAATGTATTTGAGAGCTATGATGCTGCCAAAGCATACAGTAGCGTGGACGAGTACTTTTGGGGCAAGGCACCGTCCACCGGGGACTTTTATGTTATAGTATTCAACAAGGCGACAAAAATCAGTAAAATCAAGATCATCACGGGAACCGATGATCGCCAGAATGATATTCTGCATCATGGAGCTTTGGAAGTTGGAGAGAAGTTAATAGGAACCAAAAAGGGAAGGCAGTGCTCCTCCTATATAACTTTAGGAGAGTTCAAAAATGGAAACATTGAGGTTCACGATGTGGACCACAAGATAGCGTTTGATATCGAGTGCGTTCGCATTGTGgtaacagccaatcagaaggaATGGCTTATCATTAGAAGTATAAGCCTCTGGACTACACAAGGTGCCAGTCAATGA
>TCONS_00026353
ATTttcaaatttataaaatatttaatagggAGCCAATGCAATGATGAAAGCACTGGAATGAGGTGTTTCCGAAAACGGTCCACCATTCCTTTCCTGGTGGCTCTCATTACCTTCCTGCTCTTCATAAACCTCTACATCGAGGACGGCTACGTGCTGGAGGAAGATAAACGTCAGCTGCGAGAAACCTCAATGCATCCGCTGAACTCAGAGCGATATGTTCACACCTTTAAAGACATCACCAATTTTTCTGGAACAATCAATGTGACTTATCGGTACCTCGCAGGAACACCTTTACCCAGAAAGAAGTATCTCACCATTGGATTGTCATCTGTGAAAAGAAAGCGAGGAAATTACCTGTTGGAGACCATTAAGTCTATTTTTGACCAGTCAAGCTATGAGGAGCTCAAAGAGATCATTGTTGTTGTCCACCTGGCAGATTTCGACCTTGCGTGGTGTGAAAGCCTAGTTCAAGAAATCTCCAGAAAGTTCGGCCACCATATCATTGCGGGACGGCTGCTTGTAATCCATGCACCTGAGGAGTACTACCCATCCCTGGATGGTTTGAAGAGAAATTACAATGATCCTGAGGATAGAGTTCGCTTCAGGTCCAAACAAAACGTAGATTATGCCTTTCTGCTCAACTTCTGCACCAATCTATCAGACTTCTACATGATGCTGGAGGACGATGTGCGCTGCTCCCGAAACTTCCTCACCGCCCTAAAGAAAGTTGTGGCGTCCCGGGAGGGTTCATACTGGGTGATGCTGGAGTTCTCCAAACTGGGCTACATAGGAAAGCTGTACCACTCACGAGACCTTCCCAGACTTGCTCATTTTCTGCTCATGTTCTATCAGGAGATGCCTTGCGATTGGCTTCTTATCCATTTCAGAGGCCTCCTGGCCCAGAAGGATGCCATTCGCTTCAAGCCTTCGCTTTTCCAACACATGGGCTACTATTCCTCGTATAAGGGGGCAGAGAACAAACTCAAGGACGATGACTTCGAGGAAGACTCCCTCGATATCCCAGACAACCCACCTGCTAGTTTGTACACAAACATAAATGTATTTGAGAGCTATGATGCTGCCAAAGCATACAGTAGCGTGGACGAGTACTTTTGGGGCAAGGCACCGTCCACCGGGGACTTTTATGTTATAGTATTCAACAAGGCGACAAAAATCAGTAAAATCAAGATCATCACGGGAACCGATGATCGCCAGAATGATATTCTGCATCATGGAGCTTTGGAAGTTGGAGAGAAGTTAATAGGAACCAAAAAGGGAAGGCAGTGCTCCTCCTATATAACTTTAGGAGAGTTCAAAAATGGAAACATTGAGGTTCACGATGTGGACCACAAGATAGCGTTTGATATCGAGTGCGTTCGCATTGTGgtaacagccaatcagaaggaATGGCTTATCATTAGAAGTATAAGCCTCTGGACTACACAAGGTGCCAGTCAATGA
>TCONS_00026354
CGATCCAGCATCTCGGCGGCTGCGCTCACATCCTCAATCGGCATGAGAGGGAGGACGCAGCGGCTGCGTACAACCGACTGCGCCGCGACAACTACAACACGAACCAGCTTTCTGCCAATGTAGGAAACAGCGCCGGGATCCTTATTGTTTGTTTCTATTACCACGGGACTGTCAACGTGGCTGGAAAAGACGTCAGACAATCTAGTGAGCTGCCTACCTAGACAGCTTTTTTTTTGGCGTCATACCGCGTTCGTGCGCGCTCCGGGCAGCATTCATTTACCGTCGCTGtccacacacacatgtacagtatgtgtgaacGTGCGGAGAAGTTGAAGATGACACTCTGAATCGTCTAGGCACGACTTCAAACCATTTTCTATGGATCCATTGATCGTCATCTTCTCAGTCCACAAGGCTCATTTCTGCAAGCACATCTGAGTCCGGCAAGCAGATCACACCAGAATTGTTTCCATCATGAGACTGGTGTTAAAGTACCTGGATAAGATGAGGTGTTTCCGAAAACGGTCCACCATTCCTTTCCTGGTGGCTCTCATTACCTTCCTGCTCTTCATAAACCTCTACATCGAGGACGGCTACGTGCTGGAGGAAGATAAACGTCAGCTGCGAGAAACCTCAATGCATCCGCTGAACTCAGAGCGATATGTTCACACCTTTAAAGACATCACCAATTTTTCTGGAACAATCAATGTGACTTATCGGTACCTCGCAGGAACACCTTTACCCAGAAAGAAGTATCTCACCATTGGATTGTCATCTGTGAAAAGAAAGCGAGGAAATTACCTGTTGGAGACCATTAAGTCTATTTTTGACCAGTCAAGCTATGAGGAGCTCAAAGAGATCATTGTTGTTGTCCACCTGGCAGATTTCGACCTTGCGTGGTGTGAAAGCCTAGTTCAAGAAATCTCCAGAAAGTTCGGCCACCATATCATTGCGGGACGGCTGCTTGTAATCCATGCACCTGAGGAGTACTACCCATCCCTGGATGGTTTGAAGAGAAATTACAATGATCCTGAGGATAGAGTTCGCTTCAGGTCCAAACAAAACGTAGATTATGCCTTTCTGCTCAACTTCTGCACCAATCTATCAGACTTCTACATGATGCTGGAGGACGATGTGCGCTGCTCCCGAAACTTCCTCACCGCCCTAAAGAAAGTTGTGGCGTCCCGGGAGGGTTCATACTGGGTGATGCTGGAGTTCTCCAAACTGGGCTACATAGGAAAGCTGTACCACTCACGAGACCTTCCCAGACTTGCTCATTTTCTGCTCATGTTCTATCAGGAGATGCCTTGCGATTGGCTTCTTATCCATTTCAGAGGCCTCCTGGCCCAGAAGGATGCCATTCGCTTCAAGCCTTCGCTTTTCCAACACATGGGCTACTATTCCTCGTATAAGGGGGCAGAGAACAAACTCAAGGACGATGACTTCGAGGAAGACTCCCTCGATATCCCAGACAACCCACCTGCTAGTTTGTACACAAACATAAATGTATTTGAGAGCTATGATGCTGCCAAAGCATACAGTAGCGTGGACGAGTACTTTTGGGGCAAGGCACCGTCCACCGGGGACTTTTATGTTATAGTATTCAACAAGGCGACAAAAATCAGTAAAATCAAGATCATCACGGGAACCGATGATCGCCAGAATGATATTCTGCATCATGGAGCTTTGGAAGTTGGAGAGAAGTTAATAGGAACCAAAAAGGGAAGGCAGTGCTCCTCCTATATAACTTTAGGAGAGTTCAAAAATGGAAACATTGAGGTTCACGATGTGGACCACAAGATAGCGTTTGATATCGAGTGCGTTCGCATTGTGgtaacagccaatcagaaggaATGGCTTATCATTAGAAGTATAAGCCTCTGGACTACACAAGGTGCCAGTCAATGA

Function

symbol description
mgat4c Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MGAT4C (MGAT4 family member C).

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko00513 Various types of N-glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-091204-429 Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MGAT4C (MGAT4 family member C).

Ensembl:

ensembl_id ENSDARG00000041791

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026351 False 1449 mRNA 0.46 4 16387745 16392229
TCONS_00026352 False 1461 mRNA 0.46 4 16387745 16392448
TCONS_00026353 False 1461 mRNA 0.45 4 16387745 16395668
TCONS_00026354 True 1908 mRNA 0.47 5 16387745 16590056

Neighbor

gene id symbol gene type direction distance location
XLOC_013329 NA coding downstream 10404 16372210 ~ 16377341 (-)
XLOC_013328 rassf9 coding downstream 67160 16314591 ~ 16320585 (-)
XLOC_013327 NA coding downstream 79808 16224790 ~ 16307937 (-)
XLOC_013326 slc6a15 coding downstream 205793 16151774 ~ 16181952 (-)
XLOC_013325 sspn coding downstream 264523 16111185 ~ 16123222 (-)
XLOC_013331 ampd3b coding upstream 172750 16762806 ~ 16795262 (-)
XLOC_013332 admb coding upstream 208798 16798854 ~ 16801033 (-)
XLOC_013333 swap70b coding upstream 286777 16876833 ~ 16916840 (-)
XLOC_013334 wee1 coding upstream 328370 16918426 ~ 16924221 (-)
XLOC_013335 znf143b coding upstream 334809 16924865 ~ 16937109 (-)
XLOC_013384 BX323829.1 misc upstream 2952046 19542102 ~ 19542231 (-)
XLOC_013324 NA non-coding downstream 369658 15991454 ~ 16018087 (-)
XLOC_013323 NA non-coding downstream 417172 15939261 ~ 15970573 (-)
XLOC_013321 CR854977.1 non-coding downstream 511965 15875662 ~ 15875780 (-)
XLOC_013345 NA non-coding upstream 901265 17491321 ~ 17492706 (-)
XLOC_013349 NA non-coding upstream 1187471 17777527 ~ 17786790 (-)
XLOC_013351 NA non-coding upstream 1521938 18111994 ~ 18113888 (-)
XLOC_013355 BX470163.3 non-coding upstream 1979185 18569241 ~ 18569322 (-)
XLOC_013356 BX470163.2 non-coding upstream 1987418 18577474 ~ 18577549 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_06278898_06283356 MGAT4C coding CI01000013 null 6278898 ~ 6285154 (+)