RNA id: TCONS_00026354


Basic Information

Item Value
RNA id TCONS_00026354
length 1908
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_013330
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16387745 ~ 16590056 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGATCCAGCATCTCGGCGGCTGCGCTCACATCCTCAATCGGCATGAGAGGGAGGACGCAGCGGCTGCGTACAACCGACTGCGCCGCGACAACTACAACACGAACCAGCTTTCTGCCAATGTAGGAAACAGCGCCGGGATCCTTATTGTTTGTTTCTATTACCACGGGACTGTCAACGTGGCTGGAAAAGACGTCAGACAATCTAGTGAGCTGCCTACCTAGACAGCTTTTTTTTTGGCGTCATACCGCGTTCGTGCGCGCTCCGGGCAGCATTCATTTACCGTCGCTGtccacacacacatgtacagtatgtgtgaacGTGCGGAGAAGTTGAAGATGACACTCTGAATCGTCTAGGCACGACTTCAAACCATTTTCTATGGATCCATTGATCGTCATCTTCTCAGTCCACAAGGCTCATTTCTGCAAGCACATCTGAGTCCGGCAAGCAGATCACACCAGAATTGTTTCCATCATGAGACTGGTGTTAAAGTACCTGGATAAGATGAGGTGTTTCCGAAAACGGTCCACCATTCCTTTCCTGGTGGCTCTCATTACCTTCCTGCTCTTCATAAACCTCTACATCGAGGACGGCTACGTGCTGGAGGAAGATAAACGTCAGCTGCGAGAAACCTCAATGCATCCGCTGAACTCAGAGCGATATGTTCACACCTTTAAAGACATCACCAATTTTTCTGGAACAATCAATGTGACTTATCGGTACCTCGCAGGAACACCTTTACCCAGAAAGAAGTATCTCACCATTGGATTGTCATCTGTGAAAAGAAAGCGAGGAAATTACCTGTTGGAGACCATTAAGTCTATTTTTGACCAGTCAAGCTATGAGGAGCTCAAAGAGATCATTGTTGTTGTCCACCTGGCAGATTTCGACCTTGCGTGGTGTGAAAGCCTAGTTCAAGAAATCTCCAGAAAGTTCGGCCACCATATCATTGCGGGACGGCTGCTTGTAATCCATGCACCTGAGGAGTACTACCCATCCCTGGATGGTTTGAAGAGAAATTACAATGATCCTGAGGATAGAGTTCGCTTCAGGTCCAAACAAAACGTAGATTATGCCTTTCTGCTCAACTTCTGCACCAATCTATCAGACTTCTACATGATGCTGGAGGACGATGTGCGCTGCTCCCGAAACTTCCTCACCGCCCTAAAGAAAGTTGTGGCGTCCCGGGAGGGTTCATACTGGGTGATGCTGGAGTTCTCCAAACTGGGCTACATAGGAAAGCTGTACCACTCACGAGACCTTCCCAGACTTGCTCATTTTCTGCTCATGTTCTATCAGGAGATGCCTTGCGATTGGCTTCTTATCCATTTCAGAGGCCTCCTGGCCCAGAAGGATGCCATTCGCTTCAAGCCTTCGCTTTTCCAACACATGGGCTACTATTCCTCGTATAAGGGGGCAGAGAACAAACTCAAGGACGATGACTTCGAGGAAGACTCCCTCGATATCCCAGACAACCCACCTGCTAGTTTGTACACAAACATAAATGTATTTGAGAGCTATGATGCTGCCAAAGCATACAGTAGCGTGGACGAGTACTTTTGGGGCAAGGCACCGTCCACCGGGGACTTTTATGTTATAGTATTCAACAAGGCGACAAAAATCAGTAAAATCAAGATCATCACGGGAACCGATGATCGCCAGAATGATATTCTGCATCATGGAGCTTTGGAAGTTGGAGAGAAGTTAATAGGAACCAAAAAGGGAAGGCAGTGCTCCTCCTATATAACTTTAGGAGAGTTCAAAAATGGAAACATTGAGGTTCACGATGTGGACCACAAGATAGCGTTTGATATCGAGTGCGTTCGCATTGTGgtaacagccaatcagaaggaATGGCTTATCATTAGAAGTATAAGCCTCTGGACTACACAAGGTGCCAGTCAATGA

Function

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko00513 Various types of N-glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-091204-429 Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MGAT4C (MGAT4 family member C).

Ensembl:

ensembl_id ENSDART00000143744

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026958 lncRNA downstream 10404 16372210 ~ 16377341 (-) True XLOC_013329
TCONS_00026348 lncRNA downstream 79808 16258787 ~ 16307937 (-) False XLOC_013327
TCONS_00027284 lncRNA downstream 79812 16296881 ~ 16307933 (-) True XLOC_013327
TCONS_00027282 lncRNA downstream 121855 16251074 ~ 16265890 (-) False XLOC_013327
TCONS_00026959 lncRNA upstream 901265 17491321 ~ 17492706 (-) True XLOC_013345
TCONS_00026394 lncRNA upstream 1117902 17707958 ~ 17712667 (-) True XLOC_013348
TCONS_00027285 lncRNA upstream 1187471 17777527 ~ 17786790 (-) True XLOC_013349
TCONS_00027286 lncRNA upstream 1521938 18111994 ~ 18113888 (-) True XLOC_013351
TCONS_00026400 lncRNA upstream 1961152 18551208 ~ 18555561 (-) True XLOC_013354
TCONS_00026350 mRNA downstream 67160 16314591 ~ 16320585 (-) True XLOC_013328
TCONS_00026349 mRNA downstream 71923 16314591 ~ 16315822 (-) False XLOC_013328
TCONS_00026347 mRNA downstream 205793 16151774 ~ 16181952 (-) True XLOC_013326
TCONS_00026346 mRNA downstream 208616 16151774 ~ 16179129 (-) False XLOC_013326
TCONS_00026345 mRNA downstream 264523 16111185 ~ 16123222 (-) True XLOC_013325
TCONS_00026355 mRNA upstream 172750 16762806 ~ 16795262 (-) False XLOC_013331
TCONS_00026356 mRNA upstream 190452 16780508 ~ 16791331 (-) False XLOC_013331
TCONS_00026357 mRNA upstream 190452 16780508 ~ 16792561 (-) True XLOC_013331
TCONS_00026358 mRNA upstream 208798 16798854 ~ 16801033 (-) True XLOC_013332
TCONS_00026359 mRNA upstream 286777 16876833 ~ 16916840 (-) False XLOC_013333
TCONS_00026341 other downstream 511965 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026338 other downstream 777508 15578502 ~ 15610237 (-) True XLOC_013318
TCONS_00026339 other downstream 799544 15588087 ~ 15588201 (-) True XLOC_013319
TCONS_00026322 other downstream 1351476 15036151 ~ 15036269 (-) True XLOC_013308
TCONS_00026312 other downstream 1516609 14866383 ~ 14871136 (-) True XLOC_013303
TCONS_00026386 other upstream 821814 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026401 other upstream 1979185 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026402 other upstream 1987418 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026403 other upstream 1987758 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026408 other upstream 2106151 18696207 ~ 18701764 (-) True XLOC_013360

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_06278898_06283356.mRNA True 3255 mRNA 0.39 3 CI01000013 6278898 ~ 6285154 (+)