CI01000013_06278898_06283356 (MGAT4C)


Basic Information

Item Value
gene id CI01000013_06278898_06283356
gene name MGAT4C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6278898 ~ 6285154 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_06278898_06283356.mRNA
ATCACACCAGTAGTATTTCCATCATGAGGCTGGTGTTAAAGTGCCTGGACAAGATGAGGTGTTTCCGGAAACGTTCCACCATTCCTTTTCTGGTGGCTCTCATTACCTTCCTGCTCTTCATAAACCTCTACATCGAGGATGGCTATGTGCTGGAGGAAGATAAACGTCAGTTGCGAGAAACCTCAATGCATCCGCTGAACTCGGAGCGATATGTTCATACCTTTAAAGATATCACCAATTTTTCTGGAACAATCAATGTGACTTATCGCTACCTTGCTGGAACACCTTTACCTCGAAAGAAGTATCTCACTATTGGATTGTCATCTGTCAAAAGAAAACGAGGAAACTACCTGTTGGAGACCATCAAGTCCATTTTTGACCAATCAAGTTATGAGGAGCTCAAGGAGATTGTTGTGGTTGTCCACTTGGCAGATTTCGACCTGGCATGGTGCGAGAGCCTAGTTCAGGAAATCTCAAGGAAATTCGGCCACCATATCATTGCAGGACGGCTGCTAGTTATCCATGCACCTGAGGAGTACTACCCGTCCCTGGATGGATTGAAGAGAAATTACAATGATCCGGAGGATAGAGTACGATTCCGTTCCAAACAGAATGTAGATTATGCTTTTCTGCTCAACTTCTGCACCAACCTGTCAGACTTCTACATGATGTTGGAGGATGATGTGCGCTGCTCCCGAAACTTCCTCACTGCCTTGAAGAAAGTGGTGTCATCTAGGGAGGGATCGTACTGGGTGATGCTGGAATTCTCCAAACTGGGCTACATTGGGAAGCTGTACCACTCACGAGACCTTCCCAGACTTGCCCATTTCCTGCTCATGTTCTATCAGGAGATGCCTTGCGATTGGCTTCTTATCCATTTCCGAGGCCTACTGGCCCAGAAGGATGCGATTCGCTTCAAGCCTTCTCTTTTCCAACACATGGGCTACTATTCCTCTTACAAGGGTGCAGAAAACAAACTTAAGGATGATGACTTTGAGGAAGACTCCCTTGATATCCCAGACAATCCACCTGCCAGTTTGTACACAAACATAAATGTGTTTGAGAGCTATGATGCTGCCAAAGCTTACAGTAGCGTGGACGAGTACTTTTGGGGCAAGGCCCCTTCCACTGGGGACTTTTATGTTATAGTATTCAACAAGGCAACAAAAATCAGCAAAATCAAGATCATAACGGGAACAGATGATCGCCAGAATGATATTTTGCATCATGGAGCTCTGGAAGTGGGAGAGAAATCAATAGGAACCAAAAAGGGAAGGCAGTGCTCCTCCTATATAACTTTAGGGGAGTTTAAAAATGGAAACATTGAGGTTTATGATGTGGACCACAAGATAGCATTTGATATTGAGTGTGTTCGCATTGTGGTGACGGCAAGTCAGAAAGAATGGCTTATCATTAGAAGCATAAGCCTCTGGACTACACAAGGTGCCAGTCAATGAGAACTTTTTTGAACCGTAGCTCAAGGCACAAATATCTGTTTATTTATCTATTTATTTATTATTTATTCACTCTCACCTGAGAAATCTTTATTTATTCATCAGACTAATTTAAAGGAAAATTTAAAGGCAGTACAAGATTTCACACATCAGAGGGAGGTGTACTCCCTTTTTCCATTTTTACTCCATAATGTCAAAAAGCTTTGTCTCAGTTGTTTTTGCCTTATTTTCCAGTGAAGATTCCTAAGCATCTTTAAAATCAGATTAATTTATGTGAGAAACAAAATCAATATATTTTTTAATTAACTTTTTCTTACTTGAATCATAAATCTATTAAGATATGGTGAGGTTTATGCTTAAAATAAGAAGAAAAAAATGCCAGTGGAGTAAGAAAGATGTTCCAAAACAACTCTTAGTACTTTGCATCATTGTGCTTTTAGTAAATGTGTCCTGTTTATAAGAATGTTTATACATTTTAACTGGAAAACAAGACAAAAATACAGTTTAAGGAAGTGATTTTTTGCAGTGTAGCTCTTTCCCATATTTTATCAGACACATTATCCTATTGTAGTCATTGAAAAAGTTGACTGAAGCTGAACTTTCAGCATTTCATTTCGGTAAAGTTTTTTGGTTTGTTCTTTTCTTCAATACATATAAAAAAAAAAAAAATGTGCTTATCCCTCTCTCCTTTCCGCCAACACAGGGTCAATATTGCCTTGAATATACAATATATTGTGGCATGAATCTACTCAGCAACATTTCGTACTATCTTCCCACTGAATGATAACAGAAATGTTATTCAATCAACCTTAGGCCAAAATAGAGTCCTTGGTATAGTTTTGGTTTGTTTGTGCATTTCTTCAGAGGCATGGACTGGAAAAGTGTGGGTATTCGCCCATCTTCTGAAGTGTTGTGATTGGACAGTACAGTGACAAATGAGGTAAACCTCCTTCCCCTTTTCAGTATTTTCCTCCTATCTTTTGCTCAGTGCAATTTTACCAGGGTAAATTGGATTTTGTTTGGCTCATTCCCCCATAAAATTACACCAGCAACAACCACCCCAGTGAAGGCCGTTCTCATAGCAAACCCCTGGCTGGAATTGTTGGACGCACCATCTAAATGCAGTTTTGTGTCATTGTGTGAGTCTATATGCACTATAGACCATATCTATCACTATGAGAATTTGTTTACTTTTTGTTTACCCAAATGACTTTGTCACAAGGCGTTTTGAGAGACATCACAACCATCTAATTACGCCGCTACACTGAACATGTCACATAAAAAATGCAATAATAAGACAACTGTTTACATGACTCTGTAATGTTGCAGAATGTGTTTATCTTTCTTTAATTTAAGACATGCCATCTTTTTCATATCATAAAAATACTCTGTAATTTGCATGATTTTTGAAGTGGTCTTTGCCAACATCCAAGATACAGTACAAAATTGACGTTAAGAAGTGCTTTGCACCAACATATGTCAAAAATTAACTTTGCCATGATTATGAAGAAGCCATTACTAGCACTATTTCTCAGGCTAGAAATGTATTAAATTGCTGTATACATTTATTTTCATCCCAGGTCAGAACTGCATTGTTTCCTTGTCAGTTTTTCATTCAGTTTATTGGAAAGTAAATACCTCTTGCCCAATTGTATTTGTGAATGGTCTTTTGGATGCATTTCAGACTTCTATGGCTATTTAATGTCACAGTATGTTTTCAATAGTTTTGTAATGCTTTCTTGTGAGCAAAGCACAGGTCCTTTTTTTAAACAGCCAGCAAAATTTTAGGGCTGGGTGTGTA

Function

symbol description
mgat4c Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MGAT4C (MGAT4 family member C).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K13748 MGAT4C; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase C

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_06278898_06283356.mRNA True 3255 mRNA 0.39 3 6278898 6285154

Neighbor

gene id symbol gene type direction distance location
CI01000013_06209318_06233289 NA coding upstream 45515 6209096 ~ 6233383 (+)
CI01000013_06132773_06163282 NA coding upstream 115261 6132565 ~ 6163637 (+)
CI01000013_06076169_06080164 NA coding upstream 198537 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA coding upstream 218629 6049864 ~ 6060269 (+)
CI01000013_06038814_06043689 NA coding upstream 233662 6038814 ~ 6045236 (+)
CI01000013_06311729_06313001 RASSF9 coding downstream 26575 6311729 ~ 6314124 (+)
CI01000013_06405275_06423872 SLC6A15 coding downstream 119042 6404196 ~ 6424521 (+)
CI01000013_06440333_06446814 SSPN coding downstream 154472 6439626 ~ 6447195 (+)
CI01000013_06548714_06565582 PLEKHG7 coding downstream 262815 6547969 ~ 6566123 (+)
CI01000013_06635640_06638681 NA coding downstream 350196 6635350 ~ 6639000 (+)
G81672 NA non-coding upstream 194003 6083474 ~ 6084895 (+)
G81738 NA non-coding downstream 45886 6331040 ~ 6331644 (+)
G81754 NA non-coding downstream 66751 6351905 ~ 6352119 (+)
G81762 NA non-coding downstream 96668 6381822 ~ 6426042 (+)
G81780 NA non-coding downstream 102685 6387839 ~ 6388687 (+)
G81765 NA non-coding downstream 163409 6448563 ~ 6449178 (+)
G80845 NA other upstream 1442666 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 2213069 4050837 ~ 4065829 (+)
G80062 NA other upstream 2694114 3584008 ~ 3584784 (+)
G81994 NA other downstream 1050791 7335945 ~ 7338239 (+)
G82168 NA other downstream 1743184 8028338 ~ 8041343 (+)
G82581 NA other downstream 3044175 9329329 ~ 9334948 (+)
G84005 NA other downstream 3316457 9601611 ~ 9602235 (+)
G84194 NA other downstream 3745454 10030608 ~ 10036953 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013330 mgat4c coding NC_007129.7 CM002902.2 16387745 ~ 16590056 (-)