CI01000013_06440333_06446814 (SSPN)


Basic Information

Item Value
gene id CI01000013_06440333_06446814
gene name SSPN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6439626 ~ 6447195 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_06440333_06446814.mRNA
CTATAAAAAAACGTCGCCTGCATGTAGTTAATGAATCTCCATAATTAACACAAAGTGAAATGAACACGTAGCATGTCCGCAGTCTCTCATAATATTCATAAGAGATTAACTGTAACCCGCTCACATGCCCGCAGGTCACGTAACTTCATCAAAATCATGTGACTGACTCCAGGCTGTTATGAATAGATTACACAGTGTGTTGCAGGAGGTTGGCAGGACTCAAACACTCGCCCACATGTTTGCCAATGACAAGAATTGTTTCTGCTCTGTAAGATCCCTGTTTCCTGTTTAGTTTCAGGGAGACTGGCAGTTGTCGTGTGTTGGAGTCCCCCCTTTATGTCTCCCCTCTCCTTTCCTACCCTCCCTCCTTTCCGTCTCCTTTCCTGTGCTCTATATGTGGCTCTTGTGGAATCTGCTCCAAATGTTTTCCATATTAGTTCAGAGCCCTTTCTGATTCCGAATAGCGGCACCCGAGCAGGGATCGCGTAGGAAGAGAAGCCTCCAGTGAGGAGGGAGGGGAAGGGAAGGGAAGGGCAGGGCAGGGCAAGCGGGCGGCAGGCAGTGTGAAGGAACAGTCTAGCTATAGAGAGCAAAAGAAACGACAGGCGAGAAAGAAAAAGAAGGACAAACAGCTAGAGGGCGAGAGCAAGAACATCTAGTTGGCCTCAGAGGAAGATTAAGAATCTCAGCACGAGACAGGAGGAATTATGGGGTCGGGGACTAGTCCGAAGGGGTCGGCTGGAGGAGGCAGCGCAGCCCCTGGCAATGAGAAGAAGGGAAAAGCAAAACCTGGAGGCCCAGTGCTGGAGGAAGCCCAAACATGTTGTGGCTGCCGCTTTCCTTTGGTGGTCGCTCTGTTACAGCTTCTGCTGGGCATCGCAGTAGCAGGCGTGGCCTTCCTCATGATCACCATTAGCCCCTCTCTGCTGGCCAGGGAGACGCCCCATTGGGCCGGCATCATTATGTGTGTGGTGTCTCTGCTGGGATTCATCCTCTTCTGCATCACCAAAGTGCCTGATGAGAAAGCATCGGTTCAATTTATCATAAAGCTCCTGTACTTCTTCCTGTGTACGATGGGGTTGGTCATTTCCGTAGTGGTCATCGCCTTCCAGTGCTACCATTATGCCCTGACTAACAGCTACAGCTGCACGGAAATGATGGAGGATTGTATGTGCACCCTGGACCCTGAGGACCCCATCGCCCGCACTTTCACCTACAGAGGTGTGACAGACTGTAGTGCCATCGTGAGCACTCTACCCATGTATTACCTTCTGCAGATGGTGCTGAACCTGGTTCAAGCCATCATCTGCCTGGTGGGGGCCTTCCTGATATGGAAGCACAGGTACCAGGTGTTTTTCGCTGGGCTACAGACGGGATCTCCTTCTGCCCAGGATTGGCAGAAAGTTTAGAACGTCGAGAGATTTCTGTCGAGAAGTAAACATGTGGAGCGTGGGAGTGTTTGTGCCTTTAGGGAAGAAACTGTTTGCTGCAATATCTGCCCCAGTGGGAGTTTTCTGTCATGTGACCTTTTATCAAAGCAGTTGAATGAGTCTGTGTTTGTATTGCCATATTATAATATTTTGGAAAGTTTTATGCAATTTTTAGAGTTATTGTATTTTTCTACATTGGCTGTTTGAAAAAAAAAAAAAAAAGTTTACCACTGCCAAGGAGAGTATTTTTATCTATGACGCAAAACGAGACATGTTTAAAAAAAAAATGAGTGACACGAACTGCTGTTGTTGTTACTATTGTGGTAATGCCATGCATAAAAATTCATTTAATTGCCAGTA

Function

symbol description
sspn Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be part of dystrophin-associated glycoprotein complex. Predicted to be active in sarcolemma. Orthologous to human SSPN (sarcospan).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_06440333_06446814.mRNA True 1790 mRNA 0.48 3 6439626 6447195

Neighbor

gene id symbol gene type direction distance location
CI01000013_06405275_06423872 SLC6A15 coding upstream 15105 6404196 ~ 6424521 (+)
CI01000013_06311729_06313001 RASSF9 coding upstream 125502 6311729 ~ 6314124 (+)
CI01000013_06278898_06283356 MGAT4C coding upstream 154472 6278898 ~ 6285154 (+)
CI01000013_06209318_06233289 NA coding upstream 206243 6209096 ~ 6233383 (+)
CI01000013_06132773_06163282 NA coding upstream 275989 6132565 ~ 6163637 (+)
CI01000013_06548714_06565582 PLEKHG7 coding downstream 100774 6547969 ~ 6566123 (+)
CI01000013_06635640_06638681 NA coding downstream 188155 6635350 ~ 6639000 (+)
CI01000013_06705612_06716925 ARNTL2 coding downstream 258417 6705612 ~ 6717106 (+)
CI01000013_06727503_06728691 NA coding downstream 280308 6727503 ~ 6729013 (+)
CI01000013_06737670_06759152 PPFIBP1B, PPFIBP1 coding downstream 290475 6737670 ~ 6759260 (+)
G81762 NA non-coding upstream 13584 6381822 ~ 6426042 (+)
G81780 NA non-coding upstream 50939 6387839 ~ 6388687 (+)
G81754 NA non-coding upstream 87507 6351905 ~ 6352119 (+)
G81738 NA non-coding upstream 107982 6331040 ~ 6331644 (+)
G81672 NA non-coding upstream 354731 6083474 ~ 6084895 (+)
G81765 NA non-coding downstream 1368 6448563 ~ 6449178 (+)
G81789 NA non-coding downstream 4264 6451459 ~ 6451669 (+)
G81790 NA non-coding downstream 4530 6451725 ~ 6451932 (+)
G81843 NA non-coding downstream 168323 6615518 ~ 6644918 (+)
G81864 NA non-coding downstream 206745 6653940 ~ 6654270 (+)
CI01000013_06076169_06080164 NA other upstream 357259 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 380130 6049864 ~ 6060269 (+)
G80845 NA other upstream 1603394 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 2373797 4050837 ~ 4065829 (+)
G80062 NA other upstream 2854842 3584008 ~ 3584784 (+)
G81994 NA other downstream 888750 7335945 ~ 7338239 (+)
G82168 NA other downstream 1581143 8028338 ~ 8041343 (+)
G82581 NA other downstream 2882134 9329329 ~ 9334948 (+)
G84005 NA other downstream 3154416 9601611 ~ 9602235 (+)
G84194 NA other downstream 3583413 10030608 ~ 10036953 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013325 sspn coding NC_007129.7 CM002902.2 16111185 ~ 16123222 (-)
bowfin (Amia calva) AMCG00012752 NA coding CM030125.1 CM030125.1 6607194 ~ 6619758 (-)