AMCG00012752


Basic Information

Item Value
gene id AMCG00012752
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6607194 ~ 6619758 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012752
TAGCAGCACAGCCTCACTAGAACAGGAGAAAACTCTTCAGGGGGGCAGAAAGGCAAGGAAAcgacacaacaacaacaacaacaacaacaacaacaacaaaaacaatttcagaAATCATCACAATGGGAGCTGATGAGAAAAGGCAGCCGAGCCCAGCCCCTAACAATAAGAGCCAGGCAGGgaaccctggaacagagaagagcGCAGAGCCTGCTCAAGAAAGGAAGGGAGACATGGAGAGGAAAGAGGGGAAGGGAAAGCACAAGACAGGCCAGCAGGAGGATTCCCATACTTGTTGTGGCTGCCGTTTTCCTTTACTGATTGCTCTATTGCAGCTGGTTTTAGGTGTTTCCATAGCAGTTGTGGCCTTCATAATGAGAGGAATCAGCTCCTCTTTGCTGGCCAGAGAGACTCCATACTGGGCTGGGATCATTGTATGCCTGGTGTCCTTACTGGGTTTTTACCTGTATTGCATAACCTACCTTCCAGATGAGAAGACATGTATGCAGTTCATTTCAAAGCTGACTTACTTCCTGCTCTGTGCCATTGGCCTGACCCTATCTGTGTTGGCAATAGCCTTCGCTGGCTATCACTATTCTCAGAGCAACAACTTCAGCTGCACGGAAGAGAGAGAGTCCTGCACTTGCAAGCTGAACCCCACCGACCCCATCGCCAGGACCTTTGTGTACAGTGACGTGAGTGACTGCGCCTCCATCACGGGCACCCTCAAACTCTACTTCCTGCTCCAGATAGTCCTGAACCTCGGCCAGGCGCTGGTGTGTCTGATTGGCTGTTTTGTGATGTGGAAGCACAGGTACCAGGTGTTTTTCGTGGGCCTCCAGCGCGGCTCCTCCAGCGAGCAGCAGTGGCAGAAGGTGTAGCTCACACCGATCGCAAAAACCCTTCCTCACTGCAGGTATTTGCAATATCTTCAACTGGTACATACCTGGGATAGACATTATTATACAAGGACACCACTGAACAGGTAAAACGATCTGCCATGCCCTTAAGGAAATCCAGTATGAAATTCTTACAGTGGTCTTCACCTACAGgaggaagtttttttttttttaaagaactcaCAGTTTCCAGTGTTgttgcagagaaaaaaacaaaagcagaaaacactaaggaaataaaaaaatccagtttGAATGGTCTACTGCCTCGATCTGATACCAAATACCTTTTTTCTTTGACAAATAGAACTGTAGGCGTTCAAGCTTCACTTACTGCATTGACATTTGGCAACTGTGAGTACTTTCACAAAAAAGGGTCAAAAGTGCACAGTACAGATATCTATCTCTTGAAATAAACTAACTATGGAAGACTTTAAATACCAGCAGCTTTTCCACAGGAGGTCCCTAAACCTCTTTATCAACAGCCAGATATTCCCTCAGCAGAATGATGATTTAGCAGCTTGCAATTATACAATATTACTAATttccatttactttttatttttattttactatattatGATACGTTGTTTATCCCTTTCTTGATACCAGTGTTGAGATGAAGAGAGtgaaaaatcattattttatatttttcaaagctgATTTGCACTGTGATTTATTTGAGTTTCCTGGTGGTGTCAGTTATGTTGTAAGCAGAAAGTGTTTTATACTGGAGATTTTAAGAAAAGACACTAACTTTTTCAATTCAggctttataaaaaaatattttatgaatttgtTATCAAATGTATCTGAAATGTACAATTAGAAGGTTGTGGGGGGAAAGATGTTATATCAacaatgcaatgtgttttttccaagTTTTTTAGTCTCCTCTGACATagatttgtattctgtatttctcTAGCTTTCACTGAAATGACTGAACACTATTACCCAGTACAGTACAGGTCTACCTATATACATTTGTGAGAAATAATGTTTACACCCATAAACCACGtagttaacaaacaaacaaatacacatacaattatatactgtaAACCTAACTGACATAAAgaaccttttaaataatttgcatagatattgaaaatgtaaagctttAGCTGATTTTAAAGTCAGGTGAGTAAGTGAATACTTACTGTATGTGCCTGTGTGGTCATGTGGTTAAGAGGAATGGTGATGAATGTGGTTGATTTtgcaaagcaagaaaaaaaaatgcttataaaGCCATGAACATCATTGCTGTTGCTTTTGTTAAATGGTCGAAATGTTTATGTAATGTTGATATTTTTGCATGGAGCTCATGCATACTGTGGTAACTCCTGGTTGGGAGAGATACTGTGTGTACATGTTCATATGTATGGatgtgtaatatattattattatcagggTTCAATTACCATAGCACCAAAAATTATCCTTCTTTAAATAATTGCATCACATGGTAGCTAAACATCTTctacacaaattacaaatcaggcataaactcattattttactttgcgCTTCATGTTGGGCCTCATGTTtaagtatctcttggttgtaTTCAGCGATGTTATGTAAAACAATGGTAAAAACAGGTCTTTGCCACATACaacttttcaaatatataactttaagATTGGGAATTAATGAAAACCTTCCCACCCACTAATATGACCCTATATGTAGTAgccagtttatttatgtttagaaGAAAGAAGCCTCTAAAAACATGGCCAATGAGTACAGGTAACTCTCAATTAGCAGGCTGGAAAAACAATTTTCATGCAATAGCAACCTATAGTACTTTTTTCTGTAGTctggaa

Function

GO: NA

KEGG:

id description
K22194 SSPN; sarcospan

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012752 True 2731 mRNA 0.39 3 6607194 6619758

Neighbor

gene id symbol gene type direction distance location
AMCG00012745 NA coding downstream 147168 6452009 ~ 6460026 (-)
AMCG00012744 NA coding downstream 171563 6412731 ~ 6435631 (-)
AMCG00012743 NA coding downstream 228940 6362449 ~ 6378254 (-)
AMCG00012742 NA coding downstream 280119 6289631 ~ 6327075 (-)
AMCG00012736 NA coding downstream 349270 6256830 ~ 6257924 (-)
AMCG00012757 strap,LOC106576022,LOC106609126,LOC105020178 coding upstream 196050 6815808 ~ 6823765 (-)
AMCG00012758 NA coding upstream 308772 6928530 ~ 6981212 (-)
AMCG00012759 NA coding upstream 396347 7016105 ~ 7024518 (-)
AMCG00012760 NA coding upstream 593987 7213745 ~ 7235643 (-)
AMCG00012766 NA coding upstream 658944 7278702 ~ 7289692 (-)
G39462 NA non-coding downstream 319259 6285455 ~ 6287935 (-)
G39443 NA non-coding downstream 338256 6268235 ~ 6268938 (-)
G39377 NA non-coding downstream 712080 5816472 ~ 5895114 (-)
G39371 NA non-coding downstream 795158 5778290 ~ 5812036 (-)
G39295 NA non-coding downstream 1061125 5545834 ~ 5546069 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding upstream 153210 6772968 ~ 6847396 (-)
G39556 NA non-coding upstream 166698 6786456 ~ 6795733 (-)
G39561 NA non-coding upstream 278229 6897987 ~ 6898237 (-)
G39580 NA non-coding upstream 530859 7150617 ~ 7150823 (-)
G39662 NA non-coding upstream 1051478 7671236 ~ 7671642 (-)
G39487 NA other downstream 151016 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 543377 6052364 ~ 6063817 (-)
G38490 NA other downstream 4423031 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 4789994 1578955 ~ 1817200 (-)
G38458 NA other downstream 4829973 1776854 ~ 1777221 (-)
AMCG00012751 NA other upstream 18722 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 1271731 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 2492683 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 4120596 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 4238123 10857881 ~ 10862322 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013325 sspn coding NC_007129.7 CM002902.2 16111185 ~ 16123222 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_06440333_06446814 SSPN coding CI01000013 null 6439626 ~ 6447195 (+)