G39546 (kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456)


Basic Information

Item Value
gene id G39546
gene name kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6772968 ~ 6847396 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49302
ctaaaattgtgttttaaaaaaaacatatcgtTGGATTGTAGTGAGACAAGAAAGTGGAATTCATAATCAAAATGTGACAGGTCTTTTATTGAATCATTTTCTGTACACATCATGAGTTCTCCATGCGTAGCATACCTGGCCATCTTTTGAAGATGACTTTTGATCATAGTGCAAAAGCACTGCaaggaaaagacagacagaaataatTTTATAGAATTTAATTCCATTTACATCACTATGCGATTCTGTAAGTCAGAAATTTCACAGTTTCATCCaggtttttcgttttttttttttttttttttttttttttttttttttttttttttattatcatacaTTAAATAGGAGTGGTGAAATTCATGACAAAAATATAGTGACTAATTTGAGATCACCACACAGCACATACTcctataaaacattacaaagtacTTATTAAACAGTGGTCATTCAGTTCATGTGATCTGGTATGACCAACATTCCAGATCATAACAGAAAATGATTGAAACTGGATTAAACATCACTcgtataaacataaaaacaaaacaaaaaaagcacaatttacaaaatatgcaCCTTTCAGTATTACAACTATGACAAAGGTTGTTAAATACATTCCAGGTAAACATGATACATTTAAGAAGTCTAAACAGGTTGGcactcaaaacaaaaaaggatattaaaggaaacattttcttaaaattgttttaaaagtgttaattaCAACTTCATcctattatatatttaaaaaaaaaggggttTGGAGGgtttaaaaaatttaaacatgGGTTCCAGTTTACAACTTTTAAATCTTGCATacttttttccacttttatattttatcttaatATGTAGCTGGGTAATATATTTGATCACCTAAAATGTGCagacatttaaagtaattttagtAAATGACTATAATATTAGTATccctattaaaaacaaaacaaataaatggttgAAAATGGTTATAAAATTTGGTATACATTTATGATGGTGTCCATTGTGCAGTAAACATTTGCCTGAGGAACACTTAAACAGTTTATTCAAATTTGCaatcttgaaattaaaaattTTGAAGCCAGCCAAATGTCAAATCACAGAATTATTCAAATCTCATGTTTTGTAGCTTAGTACcttgttactttaaaaaacacataaccTGGCTTAATTTTGTCATCTGGTCTCTGGTATCTTATTGATCCAAGaaccttttaaatatttctgtatgGTACAATACCTGTGCAAGACCTGTTGTCTGTGCAATATTCAGTCATATGGGttacaattaaactttaattatagttttaaattattttgttattcatcaTGGGTATAatcaaggttttatttttcaatcttttCACTATCAATCCTGAATCTTTAAATATAGGACAGTAGTTCCAATTTAAAAGAATAGTTTATGATTCTACACCATGTGTATTATTAGATAGGATCACTGTGCAAGTCCTTAGATGAACAAAACCCTCTATTTCTCTGGCTTTCTGCGATTAGCCTAGTCAATAGACACAGGCTACATAAGCAGCGGTTTACAATATTGCAATAAATTTCAGTGAGGCAATCATcaggaaaaaagctttttttggggtgggggggggcaaaatatttaaaagatgaaTACATAGATTGGGCTTTTGAGCTTTTCTTCCAGGTCTTTCCTATGAAAAAAGTTCACCTCATGCCAGTTGTCATTATTCCTTGGGGGCAATTTGTATTTAAGACTATACTGAGAAAATATGCTATAGTGATGAGGTTTGATAAAGTGATTTCCTGCCATTCTGAAGCCTGAGGGACCAGGCTTGCTGTACTTCTTTCATACGATTTGTCAGATAATTCAGAGGAATCAAGTACTTTACTTTGCCCTTCACCAGGAATAGGATTAGGTATATACAGCAATTCCACATTGAGTTACCTTTAAAAGCAGACTTTGCTTCATGTAAGagtttaaagaaacattttactcCACgcatgtaaaataattcaaagggTGACtttgcttttcttatttttttctttacattttttttttaaatcaaattgtttaatttgaatggaCAATAGTTCATATCCTTAAAAGTAAGTTGAAAAttctaaaaatgaaattaaacccttaatgcaatccaaataaaatatacacccTAACCATGGTGTCATTTCATGTGAACCAAGCCTTTAAAGGTTTCAACAAATTAGTAACAGAAGTCACAGGTACTTTTGACATCCAAAATGaagcaattattttgtgtaacatgcatgcattttaagtTAATCAGATTCTTGAATTTATTTGTAATCAAGGAAAAGTAAAAATGGGACATTgcacaacataaaacatttcaactGGGGTAGGATGATTTTCCATAATGTTGTTGGCCCTTAAATgttacagagctgtatattgaaGTGCATGCTATCTTTTCCTCGGTTTTAGGTTTGCCTTGCCACTTTGTAAGAGctgattattactattaccaTTATCTTTTTTGGCAACTTGATTCTGAAAGGATGGTTTATTCATGCAGCTTCACTGGTATAGCCTGCTTGCATactacattttgtttcagaatatTAGTGTTCATCAAGTTGCAactatacatattataaaataaaatatagcattATGTATACTGCTTCACTTTATtagcaataattaaaaacaaaactaaatagaCTACGTTTCTATGGGTAGATTCTTCTTTCCTCACTACCAGTATTTACAGTGCCATCACCAAATATCTGAAACAAAGACATTACTTTGAGCATGAAATTCCATTTTCACAAaatcaacttaatttatttttaagcaaattTAGTCTGCTGTGTAACAGCTGAATTGTTGCACATTGTGAAGTTAAATCAAACAATTTTagcaaattaatattgaataagtCTAAGCCCACACTCCCCCAATTTGTTGGTTGAAAAATCTCATTAGAAAATAGGACAAGAGACTGAAGCACTGTTGTATCCAAAAAAATCACAGGAAAAGCATAAACagatcatttcaaataaaatcacttcTGTGGAATATGAAAACCTTTTttcatgtataaaaaaaatatataagtggATGAATACCATGCTTGAGCTCTTGAGGAAATGTGCATGCACTCAAAGACTTTAATTGGTTAGATGTATGTGACAGCCACAACAAGTTTAAGGACCAACACTTAAGGAATACTGGCACTTAATAGAAAGTAAAGCTTATGCGGACTTATTTCCATACAAGCAAACCATTGATTGCTACGGTAAGGGTTCATTTCAGCAAATGTAGGCGATGCTAAGAAAACCAAGGCTAATAATTTAGTGTaatgtacaaaaaatgtattactttcagttaagtacattttaagaatgtttttgtctttaaaaggGGAACATCTATTCACATAATTATACACTTTGTCTTTgacttctttttcttctttttcccaTCTTTGCTCATCTTCTCTTTGTGCTTTCGGATTTCTCTAACTAATGTGTAAAAGGCATCATCCACGCCCTGTCTCGTCTTTGCCGATGTCTCTATGAAAGGAATTCCGTAATTTCTGGCTAAGTCCTGAGCTTGTTTTGTGTCTACTGTTCTGGATGGGAGATCACATTTGTTTCCTACCAGAACCATGGGAACATCTTCAGAGTCTTTCACTCTTTTTATCTGTTCTCTATAGTGGTGtatatcttcaaatgatttagtattattaatggcaaacacacagagaaagccCTCCCCCGTTCTCATATACTGGTCTCTCATTGCACTATACTCCTCTTGACCCGCAGTGTCGAGAATGTCCAACAAACACGTCTCCCCATCGATTACCACTTGTTTTCTGTATGAATCCTATGAGGGAGATGAAAGCATTGCAAAATGACCCAAAGGGTGCTGGGATGTCTAAAGCAACCCCACACAAACATAACGTAAAGGCTTTCCCAAGTGGGGACTTCGGATTAGGTCCCGACTTGGTTACCAGGTCCCTTCTTTGGTGGACATGTAAAAGTCTAGAGACCCATTTGGTTAGGTAGATGagaacaaacatacacaattcCAAACTTTTCAAAACTTGGGACATTTGGAGGCCACAACCACAAATGTAGTGTTTGAAAGGATTTACCAATTTGTTTAAGTTACAATAGGACACTAGTAGATGGTAACATTGctctttttttatacattt

Function

symbol description
kras Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis; heart development; and hemopoiesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in brain; heart; liver; pleuroperitoneal region; and trunk musculature. Human ortholog(s) of this gene implicated in several diseases, including Noonan syndrome (multiple); arteriovenous malformations of the brain; cardiofaciocutaneous syndrome (multiple); gastrointestinal system cancer (multiple); and hematologic cancer (multiple). Orthologous to human KRAS (KRAS proto-oncogene, GTPase).

NR:

description
GTPase KRas isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49302 True 4196 lncRNA 0.33 4 6772968 6847396

Neighbor

gene id symbol gene type direction distance location
AMCG00012752 NA coding downstream 153210 6607194 ~ 6619758 (-)
AMCG00012745 NA coding downstream 312942 6452009 ~ 6460026 (-)
AMCG00012744 NA coding downstream 337337 6412731 ~ 6435631 (-)
AMCG00012743 NA coding downstream 394714 6362449 ~ 6378254 (-)
AMCG00012742 NA coding downstream 445893 6289631 ~ 6327075 (-)
AMCG00012758 NA coding upstream 81134 6928530 ~ 6981212 (-)
AMCG00012759 NA coding upstream 168709 7016105 ~ 7024518 (-)
AMCG00012760 NA coding upstream 366349 7213745 ~ 7235643 (-)
AMCG00012766 NA coding upstream 431306 7278702 ~ 7289692 (-)
AMCG00012764 NA coding upstream 474548 7321944 ~ 7333020 (-)
G39462 NA non-coding downstream 485033 6285455 ~ 6287935 (-)
G39443 NA non-coding downstream 504030 6268235 ~ 6268938 (-)
G39377 NA non-coding downstream 877854 5816472 ~ 5895114 (-)
G39371 NA non-coding downstream 960932 5778290 ~ 5812036 (-)
G39295 NA non-coding downstream 1226899 5545834 ~ 5546069 (-)
G39561 NA non-coding upstream 50591 6897987 ~ 6898237 (-)
G39580 NA non-coding upstream 303221 7150617 ~ 7150823 (-)
G39662 NA non-coding upstream 823840 7671236 ~ 7671642 (-)
G39707 NA non-coding upstream 979882 7827278 ~ 7828147 (-)
G39839 NA non-coding upstream 1421598 8268994 ~ 8269221 (-)
AMCG00012751 NA other downstream 77044 6638480 ~ 6695924 (-)
G39487 NA other downstream 316790 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 709151 6052364 ~ 6063817 (-)
G38490 NA other downstream 4588805 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 4955768 1578955 ~ 1817200 (-)
AMCG00012782 NA other upstream 1044093 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 2265045 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 3892958 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 4010485 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 5393000 12240396 ~ 12271789 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G84163 NA non-coding NC_053119.1 CM020916.1 12459963 ~ 12553845 (+)