G81789


Basic Information

Item Value
gene id G81789
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6451459 ~ 6451669 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU93072
CGGAAGGTTGCCACTTGATTCAACCATATTAATAAGCAAAATAAAATAAAAAACATTGGCATTTCATACATTTTTTTTTTTTTATTGCTGAAGTAAGAGTGTTGAACTTTCTTCTCCTGTGTTCTATTCTTCTGCAATCCAGAATGGCAGCACAGCTGAAAGGTTTGTTTGAGCTGCGCCCTCTACTGTACAGGAGTGAATTTGCATTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU93072 True 211 lncRNA 0.36 1 6451459 6451669

Neighbor

gene id symbol gene type direction distance location
CI01000013_06440333_06446814 SSPN coding upstream 4264 6439626 ~ 6447195 (+)
CI01000013_06405275_06423872 SLC6A15 coding upstream 26938 6404196 ~ 6424521 (+)
CI01000013_06311729_06313001 RASSF9 coding upstream 137335 6311729 ~ 6314124 (+)
CI01000013_06278898_06283356 MGAT4C coding upstream 166305 6278898 ~ 6285154 (+)
CI01000013_06209318_06233289 NA coding upstream 218076 6209096 ~ 6233383 (+)
CI01000013_06548714_06565582 PLEKHG7 coding downstream 96300 6547969 ~ 6566123 (+)
CI01000013_06635640_06638681 NA coding downstream 183681 6635350 ~ 6639000 (+)
CI01000013_06705612_06716925 ARNTL2 coding downstream 253943 6705612 ~ 6717106 (+)
CI01000013_06727503_06728691 NA coding downstream 275834 6727503 ~ 6729013 (+)
CI01000013_06737670_06759152 PPFIBP1B, PPFIBP1 coding downstream 286001 6737670 ~ 6759260 (+)
G81765 NA non-coding upstream 2281 6448563 ~ 6449178 (+)
G81762 NA non-coding upstream 25417 6381822 ~ 6426042 (+)
G81780 NA non-coding upstream 62772 6387839 ~ 6388687 (+)
G81754 NA non-coding upstream 99340 6351905 ~ 6352119 (+)
G81738 NA non-coding upstream 119815 6331040 ~ 6331644 (+)
G81790 NA non-coding downstream 56 6451725 ~ 6451932 (+)
G81843 NA non-coding downstream 163849 6615518 ~ 6644918 (+)
G81864 NA non-coding downstream 202271 6653940 ~ 6654270 (+)
G81862 NA non-coding downstream 215064 6666733 ~ 6670630 (+)
G81870 NA non-coding downstream 231913 6683582 ~ 6687129 (+)
CI01000013_06076169_06080164 NA other upstream 369092 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 391963 6049864 ~ 6060269 (+)
G80845 NA other upstream 1615227 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 2385630 4050837 ~ 4065829 (+)
G80062 NA other upstream 2866675 3584008 ~ 3584784 (+)
G81994 NA other downstream 884276 7335945 ~ 7338239 (+)
G82168 NA other downstream 1576669 8028338 ~ 8041343 (+)
G82581 NA other downstream 2877660 9329329 ~ 9334948 (+)
G84005 NA other downstream 3149942 9601611 ~ 9602235 (+)
G84194 NA other downstream 3578939 10030608 ~ 10036953 (+)

Expression


Co-expression Network