CI01000013_06705612_06716925 (ARNTL2)


Basic Information

Item Value
gene id CI01000013_06705612_06716925
gene name ARNTL2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6705612 ~ 6717106 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_06705612_06716925.mRNA
GAGATGCATTAGAGGAAGAACCCCAGGGCCTCTCTGTCTCTCTGTCTGGTTTGATGACCCCCACCTCAGCCACCGGCATGGCTTCTGGCATGGAGCTGCCCAGGAAACGGAAAGGCAGCATGGACATCCCAGAAACAAAATCTGCATCAAATCTAGATGAGGATATGGAGGACGACCAGGGAAGATCAGAAGGAGATGACCAGCACTTAAAAATTAAGTGCATCAGGGAACCTCACAGTCAGATCGAGAAACGACGGCGAGATAAGATGAATAACTTGATTGACGAGTTGGCAGCGATGATTCCCACCTGTAACCCCATGTCCCGCAAGCTTGACAAACTCACTGTGTTACGAATGGCTGTCCAGCACCTCAAATCACTCAAAGGAGCGACCAACTCCTTTGCAGAAGCCAATTACAAACCTGCATTCCTCCCAGATGATGAGCTCAAGCACCTTGTCCTAAGGGCTGCGGATGGATTTCTCTTTGTGGTTGGCTGTGATCGTGGAAAAATTGTCTTCGTCTCAGAATCTGTTTCAAAAATCCTGAACTACAGTCGGACGGAGTTAATTGGACAGAGCCTGTTTGATTATGTTCATCCAAAGGACATTGGAAAAGTGAAGGAACAGCTTTCTGCCTCTGAACTCTACCCGCGGGAGCGCCTCATAGATGCCAAAAAGTCCCAGCGGTACTGCACTGTGCACTGCACGGGCTACATGCGCATCTGGCCCACGCGCCAGCTGGGCACGGAGGGGGAGGCTGAGGTGGACAAAGAGAGCTCCCACTTCAGCTGCCTGGTAGCAGTGGGCCGTGTACACCCCCACACCCTCCCTCAGGCCAACGGAGAGATCAAGGTCAAGCCCACCGAATTTGTCACCCGCTACGCCATGGATGGCAAATTCACCTTCGTGGATCAACGAGCCACCACTATTCTGGGTTATTTACCCCAGGAACTGCTAGGCACATCCTGCTATGAGTACTTCCACCTGGATGACCTGCCTCATTTGGCGGATAGACACCGAAAAGTGCTGAGGAGTAAAGAGAAGATTGAGACGAATTGCTATAAGTTCAAAACGAAATATGGGTCTTTCGTCACCTTACAAAGTCAGTGGTTTAGTTTTATAAATCCCTGGACCAAAGAAGTAGAATACATAGTGTCAACCAACACAGTAATATCCGGTAAAAGTAATCCAGGTGGATCAGGAGATAAAGCCGAGCAGCCTAGCAGTTCCAAGGCCTCGGAGGATGATGCCAAGAAGTCTCAACAAGTTCCAATCATCCCAGGGATCTCCAGTGCATCTGGCATGATTTACGCTGGGTGCATAGGGACCCAAATCGCTAATGAGATAATGGACTATAATAGGATGAACTCCTCACCATCCAGCGGCAATACAAGTCCTTTCAGTGTACTGCAGGACAAGTCTCCACTGGCCCTTGCGCAGGCCAGCAGCAACGTGCCAAATGGGGAAGTAACAGATGTGGAGATGCCTGGCAAATCAAGCTCAGAGGAGGAAGCGCGGGGTGGGGCCTTCACAGTGGCAGAAAATCTCATGGAGGGGAGCTCTCAGTTGGATCTTGAGGGGGTTCCTGGGTTGGGCGCTCTGAGCACTGACGAGGCAGCCATGGCGGTCATTATGAGCTTACTGGAGACAGATGCCAACCTGGCTCTGAGGTCACTGCTACCCCTTGGCATGGATCAGAACGGAGAGACGTTCTTGGCCTGTTTTGCCATGTTGAGAAACACATGCTTCAGCCAAGCCATAATGCAAGAACTCAAATGGTCCACTGTGATCCAGTGGTACCTAAGTCTGGCCTGCCAGGGCTACTCTACTCTTGAAATAGGACCATCACTACAATTCACAGGGCCTAGGACAACATTTTTACTGATGGGCCCAATGAGAATGCCTGGATGGAGATCAGCATCCGGCAAAATGATGATTGGAAACTCTGGACAAAGTTGTCTGCAAATAAGGGCAGGGTCTCTCAGGGAACAATTCATGGAAACCCCTTCTCAAAATCCTTTGTCGGATCAGCCAAGTACCACTTTTTAGATACTTGTGTTAAGATGGTGTTGAAGACTTAAACATTGTTCAGGGCTTCATCCTTTCATTAGGTCTTCTTGTTCAGTTATGTGCAAAGACGTATAATATGCTTATGTGATCAGAACTTAGTAGGTGATTGTTGTTTAAACTTTGTATTTTAGAATGAAATCCCATAATTTTAATTATGGGA

Function

symbol description
arntl2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within circadian rhythm and photoperiodism. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hypertension and type 2 diabetes mellitus. Orthologous to human ARNTL2 (aryl hydrocarbon receptor nuclear translocator like 2).

NR:

description
Bmal2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K09099 ARNTL2, BMAL2; aryl hydrocarbon receptor nuclear translocator-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_06705612_06716925.mRNA True 2229 mRNA 0.49 18 6705612 6717106

Neighbor

gene id symbol gene type direction distance location
CI01000013_06635640_06638681 NA coding upstream 66612 6635350 ~ 6639000 (+)
CI01000013_06548714_06565582 PLEKHG7 coding upstream 139489 6547969 ~ 6566123 (+)
CI01000013_06440333_06446814 SSPN coding upstream 258417 6439626 ~ 6447195 (+)
CI01000013_06405275_06423872 SLC6A15 coding upstream 281091 6404196 ~ 6424521 (+)
CI01000013_06311729_06313001 RASSF9 coding upstream 391488 6311729 ~ 6314124 (+)
CI01000013_06727503_06728691 NA coding downstream 10397 6727503 ~ 6729013 (+)
CI01000013_06737670_06759152 PPFIBP1B, PPFIBP1 coding downstream 20564 6737670 ~ 6759260 (+)
CI01000013_06761450_06763720 NA coding downstream 43931 6761037 ~ 6764263 (+)
CI01000013_06765502_06790599 POLR3B coding downstream 48396 6765502 ~ 6790923 (+)
CI01000013_06795895_06815354 RFX4 coding downstream 78789 6795895 ~ 6816197 (+)
G81870 NA non-coding upstream 18483 6683582 ~ 6687129 (+)
G81862 NA non-coding upstream 34982 6666733 ~ 6670630 (+)
G81864 NA non-coding upstream 51342 6653940 ~ 6654270 (+)
G81843 NA non-coding upstream 60694 6615518 ~ 6644918 (+)
G81790 NA non-coding upstream 253680 6451725 ~ 6451932 (+)
G81904 NA non-coding downstream 146096 6863202 ~ 6863421 (+)
G81918 NA non-coding downstream 164850 6881956 ~ 6882224 (+)
G81920 NA non-coding downstream 170387 6887493 ~ 6887821 (+)
G81883 NA non-coding downstream 187950 6905056 ~ 6905344 (+)
G81939 NA non-coding downstream 270787 6987893 ~ 7085501 (+)
CI01000013_06076169_06080164 NA other upstream 623245 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 646116 6049864 ~ 6060269 (+)
G80845 NA other upstream 1869380 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 2639783 4050837 ~ 4065829 (+)
G80062 NA other upstream 3120828 3584008 ~ 3584784 (+)
G81994 NA other downstream 618839 7335945 ~ 7338239 (+)
G82168 NA other downstream 1311232 8028338 ~ 8041343 (+)
G82581 NA other downstream 2612223 9329329 ~ 9334948 (+)
G84005 NA other downstream 2884505 9601611 ~ 9602235 (+)
G84194 NA other downstream 3313502 10030608 ~ 10036953 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012727 NA coding CM030125.1 CM030125.1 5264273 ~ 5278114 (+)