G81862


Basic Information

Item Value
gene id G81862
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6666733 ~ 6670630 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU93147
ATGTGAGTGCATTGTAGTGATACCCTGATGCTTTATCTCCACAGACCACACACAGTTCCTCGCCTTTGCTCCTTCCGGAGTGGGCTGCGTTTCTGGACCTTCTGCACACAGTCGGGACTACAGGGCAAGACTCGTCGAGCTCATTATCAAAGCCACCCTCCAATGGTCCTTTCCTCATCTCAAACACAGTGGATGTAGAGTACCATTCCTCCCCACCATACTGTGAGTAGCAGTGCTGATTGGAGTAGTATGATGGTGATGACATGGAGGGCTCCACCGAGGTGTACTGCATGCTGGGATAGCTGGTGAAGGGCATGACCTCCTGGTCATGTAGCAAAGGACTGTTCTGCTCTGCCAGAATATCCAAAAAAGTGTGAGCCCTCTGATAGGGGGAACGCATCGCTGGGTGGGATCTGTAAAGGTCCCACCACATTGACGTCATGGCCCACCCACTCATTCATTCAGAAGCCTGTGTGTTAAGTCTTGGCGTTCAAAGATCCCTCAGTCCAGAATGGAAATCCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU93147 True 523 lncRNA 0.51 2 6666733 6670630

Neighbor

gene id symbol gene type direction distance location
CI01000013_06635640_06638681 NA coding upstream 27733 6635350 ~ 6639000 (+)
CI01000013_06548714_06565582 PLEKHG7 coding upstream 100610 6547969 ~ 6566123 (+)
CI01000013_06440333_06446814 SSPN coding upstream 219538 6439626 ~ 6447195 (+)
CI01000013_06405275_06423872 SLC6A15 coding upstream 242212 6404196 ~ 6424521 (+)
CI01000013_06311729_06313001 RASSF9 coding upstream 352609 6311729 ~ 6314124 (+)
CI01000013_06705612_06716925 ARNTL2 coding downstream 34982 6705612 ~ 6717106 (+)
CI01000013_06727503_06728691 NA coding downstream 56873 6727503 ~ 6729013 (+)
CI01000013_06737670_06759152 PPFIBP1B, PPFIBP1 coding downstream 67040 6737670 ~ 6759260 (+)
CI01000013_06761450_06763720 NA coding downstream 90407 6761037 ~ 6764263 (+)
CI01000013_06765502_06790599 POLR3B coding downstream 94872 6765502 ~ 6790923 (+)
G81864 NA non-coding upstream 12463 6653940 ~ 6654270 (+)
G81843 NA non-coding upstream 21815 6615518 ~ 6644918 (+)
G81790 NA non-coding upstream 214801 6451725 ~ 6451932 (+)
G81789 NA non-coding upstream 215064 6451459 ~ 6451669 (+)
G81765 NA non-coding upstream 217555 6448563 ~ 6449178 (+)
G81870 NA non-coding downstream 12952 6683582 ~ 6687129 (+)
G81904 NA non-coding downstream 192572 6863202 ~ 6863421 (+)
G81918 NA non-coding downstream 211326 6881956 ~ 6882224 (+)
G81920 NA non-coding downstream 216863 6887493 ~ 6887821 (+)
G81883 NA non-coding downstream 234426 6905056 ~ 6905344 (+)
CI01000013_06076169_06080164 NA other upstream 584366 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 607237 6049864 ~ 6060269 (+)
G80845 NA other upstream 1830501 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 2600904 4050837 ~ 4065829 (+)
G80062 NA other upstream 3081949 3584008 ~ 3584784 (+)
G81994 NA other downstream 665315 7335945 ~ 7338239 (+)
G82168 NA other downstream 1357708 8028338 ~ 8041343 (+)
G82581 NA other downstream 2658699 9329329 ~ 9334948 (+)
G84005 NA other downstream 2930981 9601611 ~ 9602235 (+)
G84194 NA other downstream 3359978 10030608 ~ 10036953 (+)

Expression


Co-expression Network