CI01000329_00412042_00412968 (H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421)


Basic Information

Item Value
gene id CI01000329_00412042_00412968
gene name H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000329
NCBI id null
chromosome length 1403501
location 412023 ~ 413393 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000329_00412042_00412968.mRNA
ATGGCACGTACCAAACAGACTGCCCGTAAATCCACTGGTGGTAAAGCCCCCAGGAAGCAGCTGGCCACCAAGGCGGCCAGGAAGAGTGCGCCGTCTACAGGTGGAGTCAAGAAGCCCCACAGATACCGTCCAGGAACTGTGGCTCTTCGTGAGATCCGTCGGTACCAGAAGTCCACAGAGTTGCTGATCCGCAAGCTTCCGTTCCAGCGTCTGGTTCGTGAGATTGCTCAGGATTTCAAGACCGACTTGCGTTTCCAGAGCGCTGCCATTGGCGCCTTGCAGGAGGCAAGCGAAGCATATCTGGTGGGTCTGTTTGAGGACACCAACTTGTGCGCCATCCACGCCAAACGTGTCACCATCATGCCCAAAGACATCCAGTTGGCCCGTCGAATCCGTGGAGAGCGTGCTTAAACTTTACCATTTACTCAACTTTTTTTTTTTTTTTTTTGTGTGTGTGAAGGAATATATGAGGGAGGGGTTTGTTGTGTGGGGGGGTTGGGTGGGAGGGGCATTGGGGTTCTTACACTCTTGACTATAAATGCCTGTGTAGTTTAAGTTTATTTTTTTTTTTTTGTAATTTTTTTTTTTTTTTTTGGTAGTTGCGGTAGGGGAGGGGGTATCTTGTGGTTCAAGCTGATAGTAGGGGGGGCAGCGTCAGAACATTCCGGGAGCTCCTCAGGGTTTTAAAGTTTGTATTTTAGACTTTCATATACCTCTGCCTAGTCTGCATGCTTCATGATGAATTAGAATGTGTCCATTTTATTTCTATCGTTATTATATTGGGTTTCTCTTCTATTGTGGCCATTTGGTTGTAA

Function

symbol description
h3f3a Part of nucleosome. Is expressed in pharyngeal arch. Orthologous to human H3-3A (H3.3 histone A).
h3f3c Orthologous to human H3-3B (H3.3 histone B).
h3f3b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Involved in brain development and response to hormone. Predicted to be located in chromosome, telomeric region and nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H3-3B (H3.3 histone B).

GO:

id name namespace
GO:0042393 histone binding molecular_function

KEGG:

id description
K11253 H3; histone H3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000329_00412042_00412968.mRNA False 815 mRNA 0.47 3 412042 413372

Neighbor

gene id symbol gene type direction distance location
CI01000329_00384411_00393692 WDR24 coding upstream 18276 384411 ~ 393766 (+)
CI01000329_00360998_00370013 RHBDL1 coding upstream 40162 360998 ~ 373480 (+)
CI01000329_00329479_00338686 RHOT2 coding upstream 72693 329479 ~ 339349 (+)
CI01000329_00309094_00327100 WDR90 coding upstream 84623 309094 ~ 327419 (+)
CI01000329_00291494_00300236 NLRC3 coding upstream 111699 291494 ~ 300343 (+)
CI01000329_00426815_00427667 NA coding downstream 13443 426815 ~ 427808 (+)
CI01000329_00428497_00432436 DECR2 coding downstream 15125 428497 ~ 433445 (+)
CI01000329_00435268_00463083 RAB11FIP3 coding downstream 21896 435268 ~ 464868 (+)
CI01000329_00467128_00475281 TELO2 coding downstream 51858 465230 ~ 475502 (+)
CI01000329_00476515_00484343 IFT140 coding downstream 63143 476515 ~ 484953 (+)
G472576 NA non-coding upstream 2917 408230 ~ 409125 (+)
G472577 NA non-coding upstream 35263 373581 ~ 376779 (+)
G472582 NA non-coding upstream 53618 328043 ~ 358424 (+)
G472630 NA non-coding downstream 110143 523515 ~ 596838 (+)
G472633 NA non-coding downstream 174819 588191 ~ 591520 (+)
G472692 NA non-coding downstream 194491 607863 ~ 608150 (+)
G472697 NA non-coding downstream 228156 641528 ~ 642518 (+)
G472699 NA non-coding downstream 229261 642633 ~ 658323 (+)
CI01000329_00244490_00247185 NA other upstream 164885 244490 ~ 247279 (+)
CI01000329_00816766_00819185 NA other downstream 403393 816765 ~ 819185 (+)

Expression


Co-expression Network