G472576


Basic Information

Item Value
gene id G472576
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000329
NCBI id null
chromosome length 1403501
location 408230 ~ 409125 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU542307
GTTTGAACTGTCTGGCTTTTTCCTCTTCCATCTTCTTCCTGTAGTCTCCTGAGACCGCACGCATTACCTGCCTCTTCTTCACCAAGGGAGCTTTGGAGCTGCGTAAAGTCTTCAGAGCACTTTTTGCTTCTTCCCCTAAATGGAGACGTCAAAATTACCGTAAGATTTAATCTTGTAAAAAGCGTTCACATCCTTGTAGACTTGTAAGATGTGAATTTTCTGAGAGCTCCTACTTCTACCACGTGACCGCTGTACCACCTGACTGCTGCAGATTCATTTAGGCGTTGATAGTGGTGCCATAGGAATGTATAATTCCCAGTCTGAGGACATGAACAACTCAGAGTAGAATGTCACATGTTGTCATCTCGAAATTACGGTAATTACAGCATGGCGTACACAAAGTCCAGTTTTTTTTGTCCAGAGTTTGGGTAAACTATATAAAGTTGTTGTATTTGTAGTGTCGTGACACTCACTTTGTTTGCTGGATGATTTTTGAGTTCTCAGGCCCAGCTCGAGCTGTTCGATGCACCAGTCCAGCTCTCGGTTC

Function

NR:

description
macrophage-expressed gene 1 protein

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU542307 True 547 lncRNA 0.44 2 408230 409125

Neighbor

gene id symbol gene type direction distance location
CI01000329_00384411_00393692 WDR24 coding upstream 14464 384411 ~ 393766 (+)
CI01000329_00360998_00370013 RHBDL1 coding upstream 36350 360998 ~ 373480 (+)
CI01000329_00329479_00338686 RHOT2 coding upstream 68881 329479 ~ 339349 (+)
CI01000329_00309094_00327100 WDR90 coding upstream 80811 309094 ~ 327419 (+)
CI01000329_00291494_00300236 NLRC3 coding upstream 107887 291494 ~ 300343 (+)
CI01000329_00412042_00412968 H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421 coding downstream 2917 412023 ~ 413393 (+)
CI01000329_00426815_00427667 NA coding downstream 17690 426815 ~ 427808 (+)
CI01000329_00428497_00432436 DECR2 coding downstream 19372 428497 ~ 433445 (+)
CI01000329_00435268_00463083 RAB11FIP3 coding downstream 26143 435268 ~ 464868 (+)
CI01000329_00467128_00475281 TELO2 coding downstream 56105 465230 ~ 475502 (+)
G472577 NA non-coding upstream 31451 373581 ~ 376779 (+)
G472582 NA non-coding upstream 49806 328043 ~ 358424 (+)
G472606 NA non-coding upstream 140487 267530 ~ 267743 (+)
G472630 NA non-coding downstream 114390 523515 ~ 596838 (+)
G472633 NA non-coding downstream 179066 588191 ~ 591520 (+)
G472692 NA non-coding downstream 198738 607863 ~ 608150 (+)
G472697 NA non-coding downstream 232403 641528 ~ 642518 (+)
G472699 NA non-coding downstream 233508 642633 ~ 658323 (+)
CI01000329_00244490_00247185 NA other upstream 161073 244490 ~ 247279 (+)
CI01000329_00816766_00819185 NA other downstream 407640 816765 ~ 819185 (+)

Expression


Co-expression Network