G472798


Basic Information

Item Value
gene id G472798
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000329
NCBI id null
chromosome length 1403501
location 941102 ~ 943061 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU542582
AATTCATTTTTTAGAAGTTTTCAAGTAGAATTTCTGGTATATTCTATTCTCTTCTCTTTATCTATACATACTCACAACAGTTAAAACAATAAATAAAACGTACACATTTCGTTTTTACTAAAATACTATATGATTTTCAAAAGAAAGAAAAGGCTGATTTCACGTGTATAAGCCTTTTTTTTAAATCATCATCATTATTCATATTAATATTTGTACAAAACTTCTACGTAGTGTTCTTCAGTCTCTATAAATAGAGTTCGAATGAGGAAAGTCAAGTTCTCTCTTGCGTCTTCGCACAATAATTTCATAAAAATAACCACGAGCTGAAGTGCTCCTCATGAGAATATATGGTCCTGATCCTTTAATAAAAATAGCTGCATTCTTCTTCGTCGTCGTCGTCTTCTTCCTTTGACTTAAATATGTACATATATGTCATATATTTTGAATTAAAAAGCTATATATATATATATATATTTATATATATATATTTAAAAAAATAGATTCGCTATGTGGCGCCACACATCCCTGTCCGTGGGTAAACAGTGCAATCATTCATAATCGATAAACCCTCTCGCAGGCGCATGCACGCGCTGCTCAGCAGGAGCACTTGCACTCGGAGATGATCGGGTACTGCACCGGGATCCACGTGCAGTACTTCTGCCGCAGGAAGCCCTGGCAGTAAAACCGCAGGAAGGTCTTGGTCACCGACTTGACCGGCTTGCAGGACATGCCCTCGGGGAAGGAGCACGAGCGCTCGCCGAAGCAGTTCCCTTCCTTGATGTAGCGCGGCCAGAAGCGCGCGCCCAGGTCCTTCCAAGTGTACAACACCGGGCAGTGCGTGTACATCCACAGCCACTGCAGGAACTTCCGCCGCGCCTTCTTGCCCACCTTGACGCGCCGGCCGTACGGCGTCTCCGTCAGGTCCAGCTTCTTGAGCTCGGCGGGCATGGGCAGGCGCGGCAGCTCCGGCGGCGCGCTGGCGTTCAGCTGCGCGGGCAGGTGGATGGACATGAAGTTGGGGTCGAAGTGGCTGCCCAGCTTCTTGCGCAGCGTCCTCTCCGAGAGGTCCTGCTCGCGCGGGTCGTACTCCGGGTCGGGCTCCTCGATGAGGTCCGGGACGGGCAGATGCTCGCTGGGCGAGGGCCTCAGGCGCAGGTAGGGCTGGGCCGCGTTGCCGTGCGCGCACAGGAGCAGCAGTAGCAGCGGCAGCGCGCGGGTGATGCTGCCCATGACTCGTCTTCTGTCTGTCTACGGAGTGGAGTTGGCCCTCACTGCGCCCTCGTGCATAAATAGTCCGAGCGACAGCACGAGCGAGATCTTTTAATAGACGGCCGCGTGGCCCGGAATGACATGGGACATGGGCTGTTTTTTTCAATGATACTCGCTCAGGTGAGGCGTGCCAAGTGCGAAAGTGCTTCAAAAGCGTATCCTCCTCGGACTTTCCTCTAGCGAAGCTGTTGGCGGGTCACCATGGCAACGGGATAGGATGGGATGGCACCGTTTCTACAGCCTGCTCGGGTTTTGTTGCCGGGTGCCACCCAAACTGGCGTTTGAAATGTCAGCGCGCCCGCGGAATGGAGCGCGTCTTAGCCAATGTTATTTTTACGCTCTCTCTCTCTCTCTCGCTCTCTGAGCGCACAGGCTCCAGTCCGTCCCGCCGAACAGGCGCTGCTGAACCGGGACGAGAGCCGCTCAGTCTCTCCACAGAGCGGGCAGAACTCCGCGCGCAATCAGAACCTCAACCCGCGACTAGAACATGTTCGGTGTAAGTCCGGAATAAAATCAGACTCTTGACAGTTCCGAGCAAGTCCTCTACACGTCAAGCGTTCCCGCGAACATCTGCTGCATGTTCTTCAGAACCTTCATATCCCCGCTGTGTCAGAAATCCGTCCGAAAACTCGCCTGGTCCTGATCTGGGACAGAAGAGAATGAGCGCGTCTGGAGGAGAACTCCTCTCTTT
>TU542578
CTATGTGGCGCCACACATCCCTGTCCGTGGGTAAACAGTGCAATCATTCATAATCGATAAACCCTCTCGCAGGCGCATGCACGCGCTGCTCAGCAGGAGCACTTGCACTCGGAGATGATCGGGTACTGCACCGGGATCCACGTGCAGTACTTCTGCCGCAGGAAGCCCTGGCAGTAAAACCGCAGGAAGGTCTTGGTCACCGACTTGACCGGCTTGCAGGACATGCCCTCGGGGAAGGAGCACGAGCGCTCGCCGAAGCAGTTCCCTTCCTTGATGTAGCGCGGCCAGAAGCGCGCGCCCAGGTCCTTCCAAGTGTACAACACCGGGCAGTGCGTGTACATCCACAGCCACTGCAGGAACTTCCGCCGCGCCTTCTTGCCCACCTTGACGCGCCGGCCGTACGGCGTCTCCGTCAGGTCCAGCTTCTTGAGCTCGGCGGGCATGGGCAGGCGCGGCAGCTCCGGCGGCGCGCTGGCGTTCAGCTGCGCGGGCAGGTGGATGGACATGAAGTTGGGGTCGAAGTGGCTGCCCAGCTTCTTGCGCAGCGTCCTCTCCGAGAGGTCCTGCTCGCGCGGGTCGTACTCCGGGTCGGGCTCCTCGATGAGGTCCGGGACGGGCAGATGCTCGCTGGGCGAGGGCCTCAGGCGCAGGTAGGGCTGGGCCGCGTTGCCGTGCGCGCACAGGAGCAGCAGTAGCAGCGGCAGCGCGCGGGTGATGCTGCCCATGACTCGTCTTCTGTCTGTCTACGGAGTGGAGTTGGCCCTCACTGCGCCCTCGTGCATAAATAGTCCGAGCGACAGCACGAGCGAGATCTTTTAATAGACGGCCGCGTGGCCCGGAATGACATGGGACATGGGCTGTTTTTTTCAATGATACTCGCTCAGGTGAGGCGTGCCAAGTGCGAAAGTGCTTCAAAAGCGTATCCTCCTCGGACTTTCCTCTAGCGAAGCTGTTGGCGGGTCACCATGGCAACGGGATAGGATGGGATGGCACCGTTTCTACAGCCTGCTCGGGTTTTGTTGCCGGGTGCCACCCAAACTGGCGTTTGAAATGTCAGCGCGCCCGCGGAATGGAGCGCGTCTTAGCCAATGTTATTTTTACGCTCTCTCTCTCTCTCTCGCTCTCTGAGCGCACAGGCTCCAGTCCGTCCCGCCGAACAGGCGCTGCTGAACCGGGACGAGAGCCGCTCAGTCTCTCCACAGAGCGGGCAGAACTCCGCGCGCAATCAGAACCTCAACCCGCGACTAGAACATGTTCGGTGTAAGTCCGGAATAAAATCAGACTCTTGACAGTTCCGAGCAAGTCCTCTACACGTCAAGCGTTCCCGCGAACATCTGCTGCATGTTCTTCAGAACCTTCATATCCCCGCTGTGTCAGAAATCCGTCCGAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU542582 False 1960 lncRNA 0.52 1 941102 943061
TU542578 True 1392 lncRNA 0.61 1 941607 942998

Neighbor

gene id symbol gene type direction distance location
CI01000329_00871039_00879185 NA coding upstream 61684 871039 ~ 879418 (+)
CI01000329_00816766_00819185 NA coding upstream 121917 816765 ~ 819185 (+)
CI01000329_00688419_00704145 MYBPC2B, MYBPC2 coding upstream 236363 688419 ~ 704739 (+)
CI01000329_00612210_00623205 NA coding upstream 317787 612210 ~ 623315 (+)
CI01000329_00509475_00516931 NA coding upstream 424100 509475 ~ 517002 (+)
CI01000329_01058869_01075680 CAPN15 coding downstream 115808 1058869 ~ 1077457 (+)
CI01000329_01081883_01092681 MSS51 coding downstream 138822 1081686 ~ 1093309 (+)
CI01000329_01119864_01127781 NA coding downstream 175344 1118405 ~ 1129093 (+)
CI01000329_01137759_01139363 ATP6V0CB, ATP6V0C, VATL, ATP6V0CA, ATP6V0C.L coding downstream 194698 1137759 ~ 1139420 (+)
CI01000329_01150741_01153690 NA coding downstream 207680 1150741 ~ 1154618 (+)
G472797 NA non-coding upstream 2058 938822 ~ 939044 (+)
G472796 NA non-coding upstream 2651 938041 ~ 938451 (+)
G472795 NA non-coding upstream 3132 937750 ~ 937970 (+)
G472794 NA non-coding upstream 3720 937162 ~ 937382 (+)
G472793 NA non-coding upstream 4069 936802 ~ 937033 (+)
G472800 NA non-coding downstream 3927 946988 ~ 947328 (+)
G472801 NA non-coding downstream 4660 947721 ~ 947933 (+)
G472803 NA non-coding downstream 12465 955526 ~ 955770 (+)
G472805 NA non-coding downstream 16086 959147 ~ 960001 (+)
G472810 NA non-coding downstream 24648 967709 ~ 969155 (+)
CI01000329_00412042_00412968 H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421 other upstream 527709 412023 ~ 413393 (+)
CI01000329_00244490_00247185 NA other upstream 693945 244490 ~ 247279 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018234 LOC106579194,LOC106578326,LOC105031632,LOC103369159 coding CM030135.1 CM030135.1 5022592 ~ 5023227 (+)