G474807


Basic Information

Item Value
gene id G474807
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 2595046 ~ 2598105 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU544855
GCGAAAAATAGTGGAGCAATATCAGAAAGGAGTTTCTCAGAGAAAAATTGCAAAGAGTTTGAAGTTATCATCATCTACAGTGCATAATATCATCCAAAGATTCAGAGAATCTGGAACAATTTCTGTGCGTAAGGGTCAAGGCCGGAAAACCATACTGGATGCCCGTGATCTTTGGGCCCTTAGACGGCACTGCATCACATACAGAAATGCTACTGTAATGGAAATCACAACATGGGTTCAGGAATACTTCCAGAAAACATTGTTGGTGAACACAATACACCGTGCCATTCGCCGTTGCCGGCTAAAACTCTATAGGTCAAAAAAGAAGCCATATCTAAACATGATCCAGAAGCGCAGGCGTTTTCTCTGGGCCAAGGATCATTTAAAATGGACTGTGGCAAAGTGGAAAACTGTTCTGTGGTCAGACGAATCAAAATTTGAAGTTCTTTTTGGAAAACTGGGACACCATGTCATCCGGACTAAAGAGGACAAGGACAACCCAAGTTGTTATCAGCGCTCAGTTCAGAAGCCTGCATCTCTGATGGTATGGGGTTGCATGAGTGCGTGTGGCATGGGCAGCTTACACATCTGGAAAGGCACCATCAATGCTGAAAGGTATATCCAAGTTCAAGAACAACATATGCTCCCATCCAGACGTCATCTTTTTCAGGGAAGACCTTGCATTTTCCAACATGACAGTGCCAGACCACATACTGCATCAATTACAACATCATGGCTGCGTAGAAGAAGGATCCGGGTACTGAAATGGCCAGCCTGCAGTCCAGATCTTTCACCCATAGAAAACATTTGGCGCATCATAAAGAGGAAGATGCGACAAAGAAGACCTAAGACAGTTGAGCAACTAGAAGCCTGTATTAGACAAGAATGGGACAACATTCCTATTCCTAAACTTGAGCAACTTGTCTCCTCAGTCCCCAGACGTTTGCAGACTGTTATAAAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU544855 True 963 TUCP 0.44 2 2595046 2598105

Neighbor

gene id symbol gene type direction distance location
CI01000330_02379648_02379944 NA coding upstream 214713 2377388 ~ 2380333 (+)
CI01000330_02280397_02289394 ETFA coding upstream 305434 2280397 ~ 2289612 (+)
CI01000330_02270814_02271081 NA coding upstream 323514 2270814 ~ 2271532 (+)
CI01000330_02133497_02266195 SCAPER coding upstream 328805 2133497 ~ 2266241 (+)
CI01000330_02116696_02127182 CTDSPL2A coding upstream 467815 2116580 ~ 2127231 (+)
CI01000330_02657515_02658888 NA coding downstream 59084 2657189 ~ 2659010 (+)
CI01000330_02924840_02955205 NA coding downstream 324908 2923013 ~ 2955282 (+)
CI01000330_03068141_03070654 NA coding downstream 469717 3067822 ~ 3071125 (+)
CI01000330_03111967_03139685 RORAA, RORA coding downstream 513131 3111236 ~ 3139744 (+)
CI01000330_03149640_03168640 NA coding downstream 551535 3149640 ~ 3168824 (+)
G474780 NA non-coding upstream 72376 2522250 ~ 2522670 (+)
G474777 NA non-coding upstream 81647 2511456 ~ 2514764 (+)
G474764 NA non-coding upstream 117572 2477261 ~ 2477474 (+)
G474763 NA non-coding upstream 121319 2473397 ~ 2473727 (+)
G474647 NA non-coding upstream 157094 2434322 ~ 2437952 (+)
G474854 NA non-coding downstream 82371 2680476 ~ 2680820 (+)
G475137 NA non-coding downstream 98071 2696176 ~ 2696610 (+)
G475141 NA non-coding downstream 100640 2698745 ~ 2698977 (+)
G475148 NA non-coding downstream 104157 2702262 ~ 2702469 (+)
G475229 NA non-coding downstream 221670 2819775 ~ 2830284 (+)
G474771 NA other upstream 84876 2500102 ~ 2510170 (+)
G474750 NA other upstream 195368 2394157 ~ 2399678 (+)
CI01000330_02046876_02054740 NA other upstream 545789 2046781 ~ 2054740 (+)
G474819 NA other downstream 77807 2675912 ~ 2676442 (+)
G475235 NA other downstream 474442 3072547 ~ 3091233 (+)
G475236 NA other downstream 987370 3585475 ~ 3590497 (+)
G475421 NA other downstream 1118439 3716544 ~ 3717419 (+)
G475483 NA other downstream 1394921 3993026 ~ 3993938 (+)

Expression


Co-expression Network