CI01000330_02133497_02266195 (SCAPER)


Basic Information

Item Value
gene id CI01000330_02133497_02266195
gene name SCAPER
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 2133497 ~ 2266241 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000330_02133497_02266195.mRNA
GTTTGCGCAGTCCGGTCCTCCAGTCCAGCTGGCGGCGTTACATTCCCTCTTGCGCTCTACATGATCCGCCAGTGTTCAGTGTAAAAGAAGAGGAGGCCTGTTTAATTTCTCGCCCTCTGGTTGCGAAGTTGTCATCCGCTGAAAGTCGCTCGTTTGACACCGGGCTCATGTCGAAGGACGGCCGGCACGATGGGCGCCGGCGCGGCGCGGGTCAGCAGCACCGGTTCGGGATGAGATCGGGTCAGAGCGGGGACGGCAGAGACAGATCGGCCAGTAACAGCTCTGGATCATCTCATGGAGGAGGGAAAGGCAGGAATACGCCCATCAACATTGCCCTAAAGGCCTCTTTCCAGCGGTCCAACAGCCATGACAAGGTGAGGAAGATCGTGGCAGAGGAAGGCCGGACTGCTCGAAATCTCATCGCATGGAGTGTCCCAGTGGAGAGCAAGGAGGAAGAGGTACACTCTTTGTCGCAGAGTTTGCGAAATCCTCCTTTTTACAATTACTTTGATGTCATTCATCTGAATTTGATAGGTGGAATATTTTGGACACAAAGAAATGTGACATTTATCTGCACTGTATTCTTCTATTCACATGCAGCTAAATCAAAGATTCAAGGTAACAGCAATGCAAGAGCTCAGCGAATCAACTCCGGGCTCCACAGGAACAAAAAGCAGAACTTGGCGATAGACTGCAAAAATGCACCTGGGTCGATACTGGACAAAGGATCTGAAAAAAGCCCCACCAAGACTCGACAGCCACGGAAGGTGGACCTCAGAGCTCGATACTGGGCCTTCCTGTTCGACAATCTGCGGAGAGCAGTGGACGAGATCTACGTCACCTGCGAATCCGACCAGAGCGTGGTGGAGTGCAGGGAGGTGTTGATGATGTTGGATAACTATGTCCGGGATTTCAAAGCTCTAATTGACTGGATCCAACTACAGGAGAAGCTGGAAAAAACAGATGCTCAGAACAGGCCCACATCTTTGGCTTGGGAAGTTCGAAAGATGTCGCCAGGACGACATGTGATGTCCAGCCCCTCATCAGACCGGATTGTACCATCACCTGGTGTTCGCCGTGCCCTCAATTTTGGAGGTCCACCTCCCACTTTGGCTGTGGCACGTCTCTCCCACACTGGACCAAGCTGGGCCGATCGGGTCAAGTCTTCCCAGTCCCTTCCTGTCCCCAGCCAAAGTGTTAATATCCCTGTTGAAAAACCAGCCAAGAAAGACGCAGAGGGCTGGGAGACTGTGCAGCGTGGGCGTTCCATGAGGCCAAGGGCCAAGGTAACCCCCGTTCTGGCCCATGTAAGCCCCAAAGATGACAGCGACAAAGAGAACCAGCGCATACAGCCCTCACCCCAGGAAAAATCTCAGGAGGTGAAGGAGCAGGAGCAACCCATACCCCAAGAGCAGAGCCAAGAGATGGAAAAGACCTCTATCATTGAGCCCCCAGCAGAAAGTATTGAAGAGCCAGGGGAGAGTGTCAGCGCCCCCTCTGAGGACACGCCACCCCCCATGTCCGACCCCGTACCACTCCCTACTTCTCTGCCTTTGCAAGCCCAGTGCCCAGACTTGGCTTCCGACCCAGACCCTCCTCCTGTATCCCTTTCCCAACCGGAGGAGCTGAGTACTGGGCAAGCCAAAGTAGAGCAGGGGTCGGAGGGGTCGGTATGGACGGTTGCGGCACCGTCGGCAAAAGTGGAGGCAGCGGTCTACGTTCCCCTGGCAGTGATGACACTGGAGAGCATGCTGGACCCCACAGAACTTTCTACTGTGAGTGCTGAGAGACACAGGCCAGGATCTAAGTCCAGCAGGCGCACTGTTGAGAGAAATCCACCTCTTATTAGGCTTGTTAGCATGACGTCTGACACTGACCTCAACACAGCTCCGGGCGTCTCCATCTTCTCCCACGGCCGTTCTGAAATTGGCACTCCGCATACTGTTCACTCGTCAGGTTCTGAAAGTGGGGGTCAAGTGCTGTGCCCTCTGATGGCAATGGGAAGGATACTTTTTCCAAAATATTTTGGCAATTTACCAGTCATCACGAGTCATGAAGACCCACAGCCTCAATCTATGGCTGAAGTTTTGGCTAAGAAGGAAGAGCTGGCTGACCGCCTGGAAAAAGCTAACGAAGAGGCAATCGCAAGTGCCATCGCTGAGGAGGAACAGCTGACACGGGAGATCCAAGCGGAGAACAACGAACTGGAGACGGACAATGAAAGTGACTTCTCTGCAAGTATCGGGAGTGGAAGTTGTGGCTTGAACTTAGACTGGAGCGAAATGCTAGCTGATTATGAAGCTCGAGAGTCCTGGCGTCAGAGTACCTCCTGGGGTGACATTGTGGAGGAAGAGCCCGCCCGCCCACCGGGCCATGGCATTCACATGCACGAGAAGCTGTCCTCTCCTTCACGCAAACGAACCATTGCGGAGTCGAAGAAGAAACATGAAGAGAAGCAACTTAAAGCCCAGCAGCTCCGAGCCAAACTGCGAGAGGAGAAGACCCACAAGCTGCAGAAACTCATGGAAAGAGAGAAGGAGGTGAGGAAGTGGAAAGAGGAGCTGTTGGATCAGAGGAGAAGAATGATGGAGGAGAAGCTGCTTCATGCTGAATTCAAACGAGAGCTTCAACTCCAGGCCATCGTGAAGAAAGCACAGGAAGAAGAGGCGAAGGTGAATGAAATCGCATTCATCAACACTCTGGAAGCCCAGAACAAGAGGCACGATGTTCTGGCTAAACTAAATGAATACGAACAACGGCTTAATGAGCTGCAGGAGGAACGCCAGCGGAGGCAGGAAGAAAAACAAGCCAGGGATGAAGCTGTTCAGGAGCGTAAGCGGGTATTGGAGGCGGAGCGACAGGCACGTGTGGAGGAGCTTCTGATGAAGAGACGGGAACAAGAGGCTAGAATCGAGCAGCAGCGGCAGGAGAAGGAGAGGGCGAGGGAAGACGCAGCACGCGAGAGAGCCAGGGACCGCGAGGAGCGTTTGGCTGCTCTCAGTGCTGCTCAGCAGGAGGCCATGGAGGAACTACAGAAGAAAATCCAGATGAAGCATGACGAGAGCAGCCGCAGACACATGGAGCAGATCGAGCAGAGGAAAGAGAAGGCCGCCGAGCTGAGCAGCGGAAGACACGCCAACACGGACTACGCCCCCAAACTCACCCCTTATGAACGGAAGAAGCAATGCTCACTCTGTAACGTTGTGATCACCTCTGAGGTCCACCTGTTCAGTCACATTAAGGGTAAGAGGCACCAGCAGGCAGTGCGGGACAGCAGCAGCATTCAAGGGAGGGAGCTGTCGGACGAGGAGGTGAACTTTCAAAACAAAGACGTCATGTCACATGATGCGTCCAAGCACTTCCGCCGCCTTAATGCCAGCAGCGAATGGAGGAGATGGCTTCATAATTGCGGAGCACAATGCCTGGGCCGGGAGGACTCTACATGCCACACAAAGAGCTTAACACCTGGTTTTTCAATAGAGGAACATCTGTCTCAAAAAAAGTACATTGTAGACATTGTGACCGACAGCAGCGTGCTCTCCGACAATGCAAAAGATGGAGAAGAGAGACAGAAAGCTCGGAAAAAGGCCAAGAAACTGCGGGCACGCATGAACTCAAGGCTTGAGAACAGAGTGTTCAGTGTGTTGGTCTACCTCAGAGAGGACGGCACACAAAAGACCCCCTGTTCAGCACTCCCAGAGGCCATCACTTTACTCACAAATTCAGAAAAAAGTTCCCTAGAGGAGAGTCAGCGTAAAGCTGTCAAAGAGGAATATTGTAATCTGGAGGATGAGGACGAGGCCAGGGCTAAGGAGTATGAGACATGCATGGAAGCCAAGTCCCAGACCCCCGACTCCCCTTACAAGGCGAAGCTCCAGCGTCTGGTAAAGGACCTGGTGAAGCAGCAGCAGGGGCAGGACAGTGGCCAGTGGGCCAGTAACAAAGTGTCTGGCCTAGACAGAACCCTGGGAGAAATCTCTCGCATTCTGGAGAAACAGATGTTATTAATTGGCGGAGATCCCCGTTTGTCAAACAGGCGAACATGTTTCAGAGCGTTTGGCTTGCTACTGTTGTGCATTGTGGCTTTTGAACAAAAATATGTTGGTTTTTCAAAAAATAATGCAGATCAGGTAGCGTTTCAGGTAGGAGGAGGTTTGACTGCTCTGGAACAGATCCTACAGGTTGTCACTGCGGCCTCCAGTCCCACTGCGGTCCCCCGTATTCCTCACAAAAGGTATAAGGTCCCAAAATTTCTTAAAAATGTGTATAAACATTCTTTTATACCAATGGCAGTTATGGCAATATTAAATCACAGAGGTCAGTCCAATGACCCCCATCCAGTCCAGAGGCCACCCAAGCTGATGAGCAACCCTCAGGGGACCTGGCTGCGGTCTGGTGGCCTGTGGCAGAGCTCACATGGAGCAGCCTGCCGATGTCAAAACGCAGCTCCTGACAGGGAATCTCGGATCCGCTCAGTTACACAATTGAAGCTCTGGTGGAAAATCAGTGTGGCTGAGGCAGTGCTGGTCCGCTGCCCAGAGTGCACAGCCCGCCAGTGGGTAAAATATACACTGGTGTTTTTGTCAGTCGGGTGGAAGTTATTGACAGGCCTAGGCCTTCGAGGCTCGCGCTATTTTTATAACGAGTGCCAATATGGTTTGGCTGAAAATGCTGAACAGATGGTGAAGGTTGCGGTGGATATCAAAATGTCCCTCTGTGCTGCCGTGAACACGTATTACCTGTCCTGTGCGCACTGCCACAACAACTGTTCCTATGTTCTCTACAGCAACAAAATTACTTTTCTCATGGACCTACTCCTCCATCAGTTAACACTCTTCGTGCCTGATGAGGACAAGTCCATCTTTGGGCGCAGTGTCAATAAGCAAATCTTTGAGGGTTTGACTACAGGACTTCTGCAGACAGTCGCCACAGTGCTGGGACAGTTGCACCCACCTAATTTGAATGGAGATGCTCCACGTATATGCAGTCCGGATGCCAAGAGCAGACCTGCCGCCAGTGAGAACTTCAACACACGTACTCAAGACCTTATCAGCTATGTGGTGAACATGGGCTTGATTGACAAGCTGTACGGCTGTTTCCTGTCCATACAAGGGCCGATCGACGAGAGTCCCAAAATGTCTGCTTTTCTGGAGCAAGCCACTGCTTTCCTCCATGGGATGTGCAAGTTGTGTTTTGCCGTGACTGGACGGGGTATGAAGTTACCAATCCTGCTAATCCTGCAGGGTGTTGTCCTGACTAAGACACACAAACATGCTGCTGTAAATCTGGTAAGATGGGCCTTAATTAAATGTGCTGCAACACAAGATGGCCAGAGAGTAAGTTCACTGAGTATCTTTGACAACAAGCGTCAGGACCCCACCGGTTTGACGGCCCTCCTGCAGAGCACTGATCTGGTGGGCGTCCTTCACATGCTGTACTGCATCCTGCTCCACAGTGCCCCCCCTGAGCCTCTCTCTGCCAGCCCCGCGGGCCCCCAGGGGCCTTACAGCCCCTCTGTCATCCAGGTGGCCCTCCAGGGTTTGCGCTTCCTCAACACCTTCGCCCTTCTGGACCTCTCAGCCTTCCAGTGTGTTTTAGGAGCGGAGGGTCTCTCTCTGGCCTTTAGACACATTGTGAGTTCTCTGCTGTGGTACTGCTCTCAACAGAGCTCTGAAGATCTGCTCCATGAGCTCATCATCTGCGTCGGCTACTTCACTGTCAACCACCCAGACAACCAGATCAAGAGCAGGTGTACTTTTCTCCTTACAAACAACCAACACAATAGCAACAAAAGGAGGCTGTTGAATAATGCAGTGACTTTGCCACCTCTGTTGGCTCTGCACTGTGTAGTAGGAACAGACATTGTTATCCGCCGCCTGGCAGTTGGCCCGTTCTTTGTTCAGCCCTGGTGGAGGGGGAAGGGGGCTGAACTAACCTGGAACCGGCAACTGCATGGCAGGTGTGACTACGCCACACTCGGTCGGGTTTTAGTTATGGGCGCATCACGTGGAAACCTCGTCCGTGACGTCTTAATGTCCCCTCGGGGGACGGGGAAGGGAGGGGACACAAGCTGCTGTTTTATGCTGCCATTTGGCTGCACATCAGGGTTTATTATTAAAAACAGCACCGACACTGGCAGATGGACCAGACCACCGGCCAGTGTTATGGAAATTCACCAAACGTCTTTGAGTTTCTTGCAACGTGGCCGGCGGACAGATGTGATTGATGGCGCGGGGGAGGAATCGCAAGTTCAAACGCCTGCTGTTGCTTTTATGGTGTCAATTGCTGAATGGATACCTCTGCAGACGCTGGTACAGGAGGACTTGGCCGAGGTCCTAATCCAAGTTTGGGGCCGTGGCAGATTTACGTGTGGGACGGGCAGAGAGGGGCGGGTTGATTTACAGCTGGCTGTGGCTTTGGCCTCACTGGTTGCGTGTGTGTGCGCTCACTGTCACTGTGTGTGTTCCAGCCACCCGCGACTCATCAAAGTGCTCTTCCCCTCGCTCATCTGCGCCTGCTACAATAACCTGCAGAACAAGGTCATCCTGCAACAGGAAATGAGCTGTGTGCTGCTGGCCACCTTCATACAGGACTGTGCCACCAACGAGAACCAATCGGACAGCAAAGCTTCACAGCCAGAGAAGGGCTGGGCTCCTCTGGACTACTGCGAGCTCTCCAACCGCTTCCCTAGAGACCAGTGGGACTCCGCACTTCAGTTCTTCCTCAAGAAGCAGGAGGAGTGAGCGAATGAGTGCAGTCTTTTACAGAAGCACATTACACACATTGACA

Function

symbol description
scaper Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human SCAPER (S-phase cyclin A associated protein in the ER).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000330_02133497_02266195.mRNA True 6789 mRNA 0.53 50 2133497 2266241

Neighbor

gene id symbol gene type direction distance location
CI01000330_02116696_02127182 CTDSPL2A coding upstream 6266 2116580 ~ 2127231 (+)
CI01000330_02102781_02112531 SQRDL coding upstream 20792 2101456 ~ 2112705 (+)
CI01000330_02046876_02054740 NA coding upstream 78757 2046781 ~ 2054740 (+)
CI01000330_01943089_01981418 TJP1B, TJP1 coding upstream 151815 1942696 ~ 1981682 (+)
CI01000330_01909910_01911512 NA coding upstream 221009 1909667 ~ 1913753 (+)
CI01000330_02270814_02271081 NA coding downstream 4573 2270814 ~ 2271532 (+)
CI01000330_02280397_02289394 ETFA coding downstream 14156 2280397 ~ 2289612 (+)
CI01000330_02379648_02379944 NA coding downstream 111147 2377388 ~ 2380333 (+)
CI01000330_02590806_02597446 NA coding downstream 323850 2590091 ~ 2597586 (+)
CI01000330_02657515_02658888 NA coding downstream 390948 2657189 ~ 2659010 (+)
G474715 NA non-coding upstream 34514 2098779 ~ 2098983 (+)
G474710 NA non-coding upstream 35307 2080746 ~ 2098190 (+)
G474687 NA non-coding upstream 129487 2003445 ~ 2004010 (+)
G474654 NA non-coding upstream 203354 1923920 ~ 1930143 (+)
G474666 NA non-coding upstream 219744 1892495 ~ 1897748 (+)
G474640 NA non-coding downstream 119519 2385760 ~ 2419163 (+)
G474649 NA non-coding downstream 154131 2420372 ~ 2423606 (+)
G474668 NA non-coding downstream 159943 2426184 ~ 2426492 (+)
G474647 NA non-coding downstream 168081 2434322 ~ 2437952 (+)
G474763 NA non-coding downstream 207156 2473397 ~ 2473727 (+)
G474750 NA other downstream 127916 2394157 ~ 2399678 (+)
G474771 NA other downstream 233861 2500102 ~ 2510170 (+)
G474777 NA other downstream 245215 2511456 ~ 2514764 (+)
G474807 NA other downstream 328805 2595046 ~ 2598105 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location