CI01000338_00384480_00389400 (SUSD1)


Basic Information

Item Value
gene id CI01000338_00384480_00389400
gene name SUSD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000338
NCBI id null
chromosome length 1590771
location 384480 ~ 389400 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000338_00384480_00389400.mRNA
AGATAAACTGTGGGCCTCCCCCAGAATTCCCACTAACCGATATAAACTGGAACAAAGCATCTACACTGGGCAGTGTGGTTCAGTACAAATGTAAATATGGACTCAAACAGGAGGGTGACAAAAACATGTCAACATGCACATCAGATGGAACATGGGAAAAAGTGTCTGTAACATGTACAGCACATTGTGGTCCTGCACCAGAGGTGCCCCACGCAGAGGTAGCATGGGACAACATCACTGCAGTGATCCACCGCTGTGCTGAAGGACACTATAGACACTCAGGAAGTAACATTTCAATATGTGACATCACAGGAAAGTGGCAGATAGCCACTCTGCATTGCAAAGAGCTGAAACTGACAATTAACGATCTGGTGGTGATTCATGAAAGATGTCTGCGCTGGAATGCAGAGAATGAGGGAAATGGGGAGAAATACACAGTGACGTTCGTTGGATTGCGAGACTTTGATCAGCTGTTCAGTGACAGGAGAAAAAAGATGTTCAGCTCCACGGCCCCGTTGCCTGTCCTCTGTTTAAATCTCTTGCCTGCTACAAACTACACCATAACCATTACAGCCGAGTCCACACGAGCCACATCTACAGTGACAGCAAACACTAGCATACCAGTCCCCCCCACACCAGAAATCAAATACAGTGAAGTAGAGGCTTTATCGCCCACTCTCAAATTACGGAGATCAATCAACACACTTGACTCAATATGTATGTACCAGGTGTTCGTGTTACCAGTCGAGGGTGTGATGCTGTTTGACTGCAGCTCGTCTGTAAGTCCGCGGTTCTTCTCGCAGCAGAGATGTGACCAAGGGTACGTCACGGCCCAGATACAGCTCAGCGGTCTGGGTGCAGAATTGAACTTCACCGTAGGGGATCAGCAGCTGTATGGAGATTTCTTCAACGCACCTCTGGAAAATGGAAAAGACTATTATATTATCCTCCGCACTGTATGCCAGTGGGGAAAGTCTAGAACACAGTCTTGTGTAATCTGGGCTAAAACCAGAGGAACACCCTACATCATGAAGATATCTGCTCTTGTAACTGTTGGATTCATAAGTGCTGTTGGCTCAGTCATTGTCATAGGATATTGGTACAGCTGGTACTGTAAGAAGTCCAGTCCCAGATATTTTTCTCCAGTTTTATAA

Function

symbol description
susd1 Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SUSD1 (sushi domain containing 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000338_00384480_00389400.mRNA True 1154 mRNA 0.46 9 384480 389400

Neighbor

gene id symbol gene type direction distance location
CI01000338_00374920_00384216 SUSD1 coding upstream 264 374920 ~ 384216 (+)
CI01000338_00368482_00370906 NA coding upstream 13476 367744 ~ 371004 (+)
CI01000338_00361265_00364692 NA coding upstream 18810 361265 ~ 365670 (+)
CI01000338_00319884_00325330 RCHY1 coding upstream 58638 319551 ~ 325842 (+)
CI01000338_00296699_00309211 IDUA coding upstream 74416 296699 ~ 310064 (+)
CI01000338_00413456_00413785 TAL2 coding downstream 23676 413076 ~ 413787 (+)
CI01000338_00418774_00423249 UGT2B6, UGT2B3, UGT2B1 coding downstream 29045 418445 ~ 423266 (+)
CI01000338_00424137_00425715 NA coding downstream 34639 424039 ~ 426419 (+)
CI01000338_00429653_00439297 NA coding downstream 39903 429303 ~ 439635 (+)
CI01000338_00692142_00701853 SLC2A11B coding downstream 302742 692142 ~ 701979 (+)
G479532 NA non-coding upstream 73253 277608 ~ 311227 (+)
CI01000338_00263946_00292542 TNKS, TNKSA, TNKSB non-coding upstream 120813 262914 ~ 292857 (+)
G479610 NA non-coding upstream 121947 262275 ~ 262533 (+)
G479609 NA non-coding upstream 122346 261930 ~ 262134 (+)
CI01000338_00250239_00256775 NA non-coding upstream 132866 250239 ~ 257242 (+)
G479573 NA non-coding downstream 19302 408702 ~ 410172 (+)
G479624 NA non-coding downstream 41476 430876 ~ 431166 (+)
G479531 NA non-coding downstream 50557 439957 ~ 440510 (+)
CI01000338_01376276_01378219 NA other downstream 986874 1376274 ~ 1378387 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location