G479531


Basic Information

Item Value
gene id G479531
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000338
NCBI id null
chromosome length 1590771
location 439957 ~ 440510 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU550318
ACACATCGCAAACATCCGGTCAACCATCAACAAGCAAGCGAACTCTTTATGTGATCCTGTCAATTTTCCTTATATGATCGGTTAAATCCCGAGATGATTAGAACAGGTTTGGTGATCGAGATTTGCTGCATGGATGATGGTCTAAAATTTAACTGTAGTCCATTTTAGATGGGTAGCAATTGATAGACTTCTAGCGCAACTATTAGAATGGGTAATTCAATCATCCAAGCTTAAATCAAATTCTTATTACTTTTTAAACTGTAGCCTATGTATGTTATACATTTGAGTTAGTATTATAATTTTGCAGTAGTTTTCGATTAAAGTTAAATTATGTTTGTTGTAGGTTAAGTGGTTTAAATCAATTTAATGTTGACTGTAAATTATGTAGGTCTTTAGAGCTTCGGAAAGTTTGTAGTTTCATAATAAGAGCATTGTGGTCAATGATGATGTTACAGATCGCATTCTGACGCAACTGATGTTAGATGCTGCGTGAACCTGAG
>TU550319
ACACATCGCAAACATCCGGTCAACCATCAACAAGCAAGCGAACTCTTTATGTGATCCTGTCAATTTTCCTTATATGATCGGTTAAATCCCGAGATGATTAGAACAGGTTTGGTGATCGAGATTTGCTGCATGGATGATGGTCTAAAATTTAACTGTAGTCCATTTTAGATGGGTAGCAATTGATAGACTTCTAGCGCAACTATTAGAATGGGTAATTCAATCATCCAAGCTTAAATCAAATTCTTATTACTTTTTAAACTGTAGCCTATGTATGTTATACATTTGAGTTAGTATTATAATTTTGCAGTAGTTTTCGATTAAAGTTAAATTATGTTTGTTGTAGGTTAAGTGGTTTAAATCAATTTAATGTTGACTGTAAATTATGTAGGTCTTTAGAGCTTCGGAAAGTTTGTAGTTTCATAATAAGAGCATTGTGGTCAATGATGATGTTACAGATCGCATTCTGACGCAACTGATGTTAGATGCTGCGTGAACCTGAGACCACACATAAAAAATAAAAAAAATAAAAACTGAGACCACGCATGTGTTCCAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU550318 False 500 lncRNA 0.34 1 439957 440456
TU550319 True 554 lncRNA 0.34 1 439957 440510

Neighbor

gene id symbol gene type direction distance location
CI01000338_00429653_00439297 NA coding upstream 552 429303 ~ 439635 (+)
CI01000338_00424137_00425715 NA coding upstream 13538 424039 ~ 426419 (+)
CI01000338_00418774_00423249 UGT2B6, UGT2B3, UGT2B1 coding upstream 16691 418445 ~ 423266 (+)
CI01000338_00413456_00413785 TAL2 coding upstream 26170 413076 ~ 413787 (+)
CI01000338_00384480_00389400 SUSD1 coding upstream 50557 384480 ~ 389400 (+)
CI01000338_00692142_00701853 SLC2A11B coding downstream 251632 692142 ~ 701979 (+)
CI01000338_00703034_00706340 GSTT2 coding downstream 262524 703034 ~ 706542 (+)
CI01000338_00729840_00736001 NA coding downstream 289330 729840 ~ 736134 (+)
CI01000338_01171674_01171967 NA coding downstream 730999 1171509 ~ 1172350 (+)
CI01000338_01335268_01354918 SCARF2 coding downstream 894758 1335268 ~ 1354918 (+)
G479624 NA non-coding upstream 8791 430876 ~ 431166 (+)
G479573 NA non-coding upstream 29785 408702 ~ 410172 (+)
G479532 NA non-coding upstream 128730 277608 ~ 311227 (+)
G479571 NA non-coding downstream 25969 466479 ~ 472007 (+)
G479530 NA non-coding downstream 147476 587986 ~ 673033 (+)
G479719 NA non-coding downstream 271436 711946 ~ 712289 (+)
G479696 NA non-coding downstream 297504 738014 ~ 739272 (+)
G479734 NA non-coding downstream 324752 765262 ~ 765485 (+)
CI01000338_01376276_01378219 NA other downstream 935764 1376274 ~ 1378387 (+)

Expression


Co-expression Network