RNA id: TU550319


Basic Information

Item Value
RNA id TU550319
length 554
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G479531
representative True

Chromosome Information

Item Value
chromosome id CI01000338
NCBI id null
chromosome length 1590771
location 439957 ~ 440510 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACATCGCAAACATCCGGTCAACCATCAACAAGCAAGCGAACTCTTTATGTGATCCTGTCAATTTTCCTTATATGATCGGTTAAATCCCGAGATGATTAGAACAGGTTTGGTGATCGAGATTTGCTGCATGGATGATGGTCTAAAATTTAACTGTAGTCCATTTTAGATGGGTAGCAATTGATAGACTTCTAGCGCAACTATTAGAATGGGTAATTCAATCATCCAAGCTTAAATCAAATTCTTATTACTTTTTAAACTGTAGCCTATGTATGTTATACATTTGAGTTAGTATTATAATTTTGCAGTAGTTTTCGATTAAAGTTAAATTATGTTTGTTGTAGGTTAAGTGGTTTAAATCAATTTAATGTTGACTGTAAATTATGTAGGTCTTTAGAGCTTCGGAAAGTTTGTAGTTTCATAATAAGAGCATTGTGGTCAATGATGATGTTACAGATCGCATTCTGACGCAACTGATGTTAGATGCTGCGTGAACCTGAGACCACACATAAAAAATAAAAAAAATAAAAACTGAGACCACGCATGTGTTCCAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU550367 lncRNA upstream 322 439069 ~ 439635 (+) True CI01000338_00429653_00439297
TU550425 lncRNA upstream 8791 430876 ~ 431166 (+) True G479624
TU550333 lncRNA upstream 26403 413118 ~ 413554 (+) True CI01000338_00413456_00413785
TU550370 lncRNA upstream 29785 408702 ~ 410172 (+) True G479573
TU550323 lncRNA upstream 128730 310484 ~ 311227 (+) True G479532
TU550368 lncRNA downstream 25969 466479 ~ 472007 (+) True G479571
TU550315 lncRNA downstream 147476 587986 ~ 615590 (+) False G479530
TU550316 lncRNA downstream 171880 612390 ~ 673033 (+) True G479530
TU550520 lncRNA downstream 271436 711946 ~ 712289 (+) True G479719
TU550497 lncRNA downstream 297504 738014 ~ 739272 (+) True G479696
CI01000338_00429653_00439297.mRNA mRNA upstream 552 429303 ~ 439405 (+) False CI01000338_00429653_00439297
CI01000338_00424137_00425715.mRNA mRNA upstream 13538 424039 ~ 426419 (+) False CI01000338_00424137_00425715
CI01000338_00418774_00423249.mRNA mRNA upstream 16691 418445 ~ 423266 (+) True CI01000338_00418774_00423249
CI01000338_00413456_00413785.mRNA mRNA upstream 26170 413076 ~ 413787 (+) False CI01000338_00413456_00413785
CI01000338_00384480_00389400.mRNA mRNA upstream 50557 384480 ~ 389400 (+) True CI01000338_00384480_00389400
CI01000338_00692142_00701853.mRNA mRNA downstream 251632 692142 ~ 701979 (+) True CI01000338_00692142_00701853
CI01000338_00703034_00706340.mRNA mRNA downstream 262524 703034 ~ 706542 (+) True CI01000338_00703034_00706340
CI01000338_00729840_00736001.mRNA mRNA downstream 289330 729840 ~ 736134 (+) True CI01000338_00729840_00736001
CI01000338_01171674_01171967.mRNA mRNA downstream 730999 1171509 ~ 1172350 (+) True CI01000338_01171674_01171967
CI01000338_01335268_01354918.mRNA mRNA downstream 894758 1335268 ~ 1354918 (+) True CI01000338_01335268_01354918
TU550329 other upstream 13820 424830 ~ 426137 (+) True CI01000338_00424137_00425715
TU550847 other downstream 935764 1377263 ~ 1377697 (+) True G480012

Expression Profile