G479571


Basic Information

Item Value
gene id G479571
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000338
NCBI id null
chromosome length 1590771
location 466479 ~ 472007 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU550368
ATTATGGTGTGGGGTTGTTTTTCAGGGGTTGGGCTTGGCCCCTTAGTTCCAGTGAAAGGAACTCTTAATGCTTCAGCATACCAAGACATTTTGGACAATTTCATGCTCCCAACTTTGTGGGAACAGTTTGGCGATGGCCCCTTCCTGTTCCAACATGACTGCGCACCAGTGCACAAAGCAAGGTCCATAAAGACATGGATGAGCGAGTTTGGTGAGGAGGAACACCTTTGGGATGAATTAGAGCGGAGACTGCGAGCCAGGCCTTCTCGACAACATCACTGCCTGACCTCACAAATGCGCTTCTAGAAGAATGGTCAAAAATTCCCATAAACACACTCCTAAACCTTGTGGAAAGCCTTCCCAGAAGAGTTGAGGCTGTTATAGCTGCAAAGGGTGGGCCAACTCCATATTAAACCCTACGGATTAAGAATGGGATGTCATCAAAGTTCATGTGCACGTAAAGGCAGGCGTCCCAAAACTTTTGGCAATATATATATATAGAGAGTTTAGTTTATTTCAGTTACTTGCCAAGGCAACGTTTAAAGTTTTCATTTAAGTTTTTTTTTAAATGTTTTTTTTTTAATGTTTTTTTTTTTTTTTAGTTTTTCATCTATTTTTACATTTTACTTCAGCTTATTTCAACTAAATAAAACTATTTTTAATAGCTTTAGTTTTATTTACAATACTGGATTTGGATGATATTAGCTGTTAATCATTTGCATTCGAGAAAAAGCAAAATGCTTTGCTATCCGCTCTCACCCTGTTGTGAAACCTGGCTGGTCTATAGGAGCGTTTGGAGAGGTTGTATACTGCATAATGACCCGCATGACGAGAATCCAGGAACAGACGCACATCCTCAATGTTATTCTTAATAGCAGATTCAACACCTTCAGCTGGGAAAGACATAACTGCAAAAACACACAAACAGACAAGTAATTAACTTTAAACCATTAGGGTTAAGACATCCAAAATGAATCTAAATTCCTATTTCACAGGTGATCGTACCTGCTAGTCTGGAGGTGATGTAGGACAGGTCCAGGTCTCCCTTAGCATAACTGCACCTGGCCACCGACTGGATGACTTTGGAAGAAGTGTCTTTGATGTTGGTGAGAAATCTTTCAGTTCCTCCTTTCAGGATATCCAAGAAGCCTCCACCCATGGCCGGGTCTGTGTCATACACACCTGGAGATTCAAACACGCATATAACCGCAGGCCAACATTTGTCAAAAGTGCTTTTACAGGGCAATAGTTTTGCATAATATATTTGACATATGCACACAAGAAACATTTCAATGCAATGACTCACAATCATCTCATAACACGTCTCAAAGAACTGTTCTTAAATTATCAGATTTTAAGGGGTTAGTTTAGTCAAAAATGCCAAAGTTTATGAGGATCATGCCATATGATATTCAAGATTTTTGCAAACACTACTATGTACGCAAGGTATTCTTAGTGCACAGTTATAACAGATTTTAAACCATGCAAACTGAGGTTGGTAGCTTTGCATGGGCATCTGATGGTCTCTTCCAGTCTAAGTAGGCTGCCTTTAATCAGAAAAAGCTGCAAAGTTGACCAGACTTGCTATAGAGAGTATGCATTGACATATCCACTTTCCCGCCGGAACACGCCCCCCTCAGCCGGACTGGATTTATCAGGGGAAACTGTGAAAACGTGAATAAAACAAGTGACTATCGGTTTAAACTAAAGGTTGGACTCGATAGTGTTCCTTACAACTTATCAAAGATCCAGACAGTGATCCATGAATATTGGCATGCAGCCAGGAATCGTGTTTCCTGACATTTATATGTGCCTGATTTTGACGCCGGGGAAATACATGAAGCAAATTTGCCTGTGAATGTTTTATATAAATACAATATATGTACTAGATCTAAATCCAGGTGATCACTTATATCAATAAGTATAAGTTTTTGTCAGTGTTTACTTAAAAACACCCAATTATGCAGAATATAATAGGGTAAATATTTAATTGATGAGTTGTCAATACAATATATAATACAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU550368 True 2024 lncRNA 0.39 2 466479 472007

Neighbor

gene id symbol gene type direction distance location
CI01000338_00429653_00439297 NA coding upstream 27074 429303 ~ 439635 (+)
CI01000338_00424137_00425715 NA coding upstream 40060 424039 ~ 426419 (+)
CI01000338_00418774_00423249 UGT2B6, UGT2B3, UGT2B1 coding upstream 43213 418445 ~ 423266 (+)
CI01000338_00413456_00413785 TAL2 coding upstream 52692 413076 ~ 413787 (+)
CI01000338_00384480_00389400 SUSD1 coding upstream 77079 384480 ~ 389400 (+)
CI01000338_00692142_00701853 SLC2A11B coding downstream 220135 692142 ~ 701979 (+)
CI01000338_00703034_00706340 GSTT2 coding downstream 231027 703034 ~ 706542 (+)
CI01000338_00729840_00736001 NA coding downstream 257833 729840 ~ 736134 (+)
CI01000338_01171674_01171967 NA coding downstream 699502 1171509 ~ 1172350 (+)
CI01000338_01335268_01354918 SCARF2 coding downstream 863261 1335268 ~ 1354918 (+)
G479531 NA non-coding upstream 25969 439957 ~ 440510 (+)
G479624 NA non-coding upstream 35313 430876 ~ 431166 (+)
G479573 NA non-coding upstream 56307 408702 ~ 410172 (+)
G479530 NA non-coding downstream 115979 587986 ~ 673033 (+)
G479719 NA non-coding downstream 239939 711946 ~ 712289 (+)
G479696 NA non-coding downstream 266007 738014 ~ 739272 (+)
G479734 NA non-coding downstream 293255 765262 ~ 765485 (+)
G479738 NA non-coding downstream 295933 767940 ~ 768226 (+)
CI01000338_01376276_01378219 NA other downstream 904267 1376274 ~ 1378387 (+)

Expression


Co-expression Network