CI01000339_00608255_00608718


Basic Information

Item Value
gene id CI01000339_00608255_00608718
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 608255 ~ 609464 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_00608255_00608718.mRNA
TGGAAAAAAAGAAACAGGTGGATCAAGATCAGCCTATGTGCCTGTCTGGAGATTTTGACTGCTTTCAATGCTCTCACCAACCAGTTGATGGCATCCTACAGCGTATCAAAAATAGTCACAAAACCAGCATGAAGAACAAGTATGAGAGCTTGTTTGAAGGATTTAATATACAGGAGAACAAAACCCTCCTGGACAAAATTTACACACAGCTTTATATAATAGAGGGAGAGAGTGAAGGGGTGAATGAAGAACACAAGGTTGTACAAGTAGAGATAGCCAGGACTGAACGCTTACAAGGTACTCCAATCAACTGCAATGACATTTTCCATCCCATATCTGATCCAAGTTATGAGAGAAAAAATGAAAAAGAAAACGTAAAGACTGTTCTTACCAAAGGCATTACTGGAAAAACAGTCTCTGTGCAAAAGTTCATTCTAGATTGGTCTGAGGGCAAAGCTAATTAGGATATTGATTTTCTATTTGTTCTTCCATTTCGGGAACTCAACTTGGTTAAAGATGACCAGTACAGTTTTCACAGACTTCTGCTTGACTTCCACCCAGAACTTCCTGAGTTTGATTCAAAGATATATGATTCGTCTAAAGTCTTATTCATCTTTGATGGTCTGGATGAAAGTAGAATTTTACTTTAATGTACTTTCATGCTCAAAATCAGGGATGGGCAACTTCGGTCCTGGAAAGCCACTGATCTGCAAAGTTTTGCTCCAACCCTAATCAAACACACCTGAACAAGTCAATCAATGTTTTCAGGATTACTAGAAAGCTACAGGCAGGTGAGATTTTATCAGGGATGGAGCTAATCCTGCAAACATGCCCCTGCAGGGCCCATTCTGGCTTTTTGCAGGGACAGTGGGCTAGGGCGAGTCCACACCAAACCTAAACAGGCCCAGCTTTGGGCTCACTGCAGGCTCTCTGTGAGCAGCCCACACTAATGAACTGCCCGCATTAAGCCCATGATGGCCCAGTGTGGGCCAGCCCGTTCGGGCCCAGAGAAACTTTTATACCTTTGGGCCCATGCAGGTTTTGTGTAAGCAGCCCACTTTCATTTCCCATGCTTTGTTTGGCTGTATTTTTTTTACAGCATTTTCTGTTTTCTTAAATGACATACAAATGTATGTAAAATTACAAAAATGATCAGTAATAAATTCAATAACAAATAATTTGGATGATAAAACGGTCACATGACTTGGCA

Function

NR:

description
novel NACHT domain containing gene, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_00608255_00608718.mRNA True 1210 mRNA 0.41 1 608255 609464

Neighbor

gene id symbol gene type direction distance location
CI01000339_00585149_00589325 BMP10 coding upstream 18178 584959 ~ 590077 (+)
CI01000339_00563492_00576878 ARHGAP25 coding upstream 30224 563492 ~ 578031 (+)
CI01000339_00541568_00553834 CDS2 coding upstream 54323 541568 ~ 553932 (+)
CI01000339_00531202_00532113 HS3ST1L2 coding upstream 75785 530438 ~ 532470 (+)
CI01000339_00405927_00407508 NA coding upstream 200025 405882 ~ 408230 (+)
CI01000339_00620788_00628381 NA coding downstream 11324 620788 ~ 628381 (+)
CI01000339_00629012_00632222 NA coding downstream 19548 629012 ~ 632362 (+)
CI01000339_00787610_00792293 NA coding downstream 178039 787503 ~ 792351 (+)
CI01000339_00967161_00982676 NA coding downstream 357474 966938 ~ 982828 (+)
CI01000339_01056819_01058832 SHISA2 coding downstream 447235 1056699 ~ 1058983 (+)
G480769 NA non-coding upstream 2351 605507 ~ 605904 (+)
G480766 NA non-coding upstream 15573 592375 ~ 592682 (+)
G480756 NA non-coding upstream 97723 510314 ~ 510532 (+)
G480755 NA non-coding upstream 98543 509495 ~ 509712 (+)
G480753 NA non-coding upstream 101635 506372 ~ 506620 (+)
G480771 NA non-coding downstream 2059 611523 ~ 611839 (+)
G480775 NA non-coding downstream 7290 616754 ~ 617046 (+)
G480776 NA non-coding downstream 7796 617260 ~ 617488 (+)
G480761 NA non-coding downstream 24950 634414 ~ 643423 (+)
G480786 NA non-coding downstream 40653 650117 ~ 654206 (+)
G480663 NA other upstream 430272 177668 ~ 177983 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA other upstream 530663 69245 ~ 93266 (+)
G481321 NA other downstream 679857 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 965070 1571624 ~ 1577706 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 1587136 2196307 ~ 2198809 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 2211296 2820576 ~ 2823479 (+)

Expression


Co-expression Network