CI01000339_01056819_01058832 (SHISA2)


Basic Information

Item Value
gene id CI01000339_01056819_01058832
gene name SHISA2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 1056699 ~ 1058983 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_01056819_01058832.mRNA
ACATAAATGACGCCTGTAGACAGTGACTCCAAATCAGATGCGACTGGCTTGCGGGATCTTCGTAGCAACATAACATTTAAACCGACTTCTGCAACCCAAAGGATTTAAACAATCGCAGTCATGACTTCATCCGTTTCCTGCGCGCTCTTTCTGTTGATATCAATCGTTCTCCCGTTGTCTTTTGCGTTATCGGGGGAATACTGTCACGGCTGGACGGATTCCTTTAACTCTTGGCACCGGGGATTCCAGTGTCCGGAGCGCTTTGACGGCGAGGACGCGCGCTACTGCTGCGGGACATGCGTGCTCAGGTACTGCTGTACATACGCGGAGGCGCGCCTCGATCAGAGCACCTGCGACACGGGCTCCGAATTTGAGAACACGGATGACATGAGAAAGATGACAGAAAGTGTTCCAACATATCTCCCCTTTGTGATTGTGGTGAGTGCGTTCCTGTCGTTCGTTCTGGTCGGTGCAGTTGTGTCTATCTGTTGCTGCCAGTGTGTGAAACCCAAAGCGAGTGATCGACCAACAGGGCCATCCGCTGCTCAGACCAGCCTGTTGGAGTCTGGAGGACCCTCTGTGGACAGTTCCACACCATCCCGCACCTCCACTTCAGGCTCCTCCATGACAAACGCTCGTCCTCCACCATCTGAACTCAGTGTTAACCTCTACGGCCCGATGGGAAACACATTTCCAACTTCTCAGTCGCAGCAGTATGTTCCTCCAGTCCCCCAGGGGGCACCACAGTTCTATCAGCCCTACATGAATTACGCTCTCCCCCCAGAACGCAGCATGTTGATGGCCCCAGCGTTCCTAGACAGCCGTTCTGCATTTGGGCAGTACTTTGTGATTGTAAAGCTCTCCAGCCGTTACAGCTGCTTGTGTGTGTGGCTGAGCAGGTTTTGTGCGTATGTGAATGGTTTTGTGCGTTTGTGTGTGGAAACGGCAGGAGGGGAGAGGACAAAAGATGCAGATCTCCTCACGCCCCTGAGAGTGGGATTAGCGCAGGTAAAGAGGGGTGTGTGAGTGAGATTAGGCTCTGGATGGCCCAGCTGGAGTCTAAGCAGATGCGTATGAGTTCATTAACGAGCTGCAGATGAACCTACTGAGTTTCAGCCCAAATCCTGTTATGATGTAAAACATGTAATGCGAAACACCAGAAGCTAAAGACACATGA

Function

symbol description
shisa2 Predicted to be involved in negative regulation of Wnt signaling pathway and negative regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_01056819_01058832.mRNA True 1177 mRNA 0.52 3 1056699 1058983

Neighbor

gene id symbol gene type direction distance location
CI01000339_00967161_00982676 NA coding upstream 73871 966938 ~ 982828 (+)
CI01000339_00787610_00792293 NA coding upstream 264348 787503 ~ 792351 (+)
CI01000339_00629012_00632222 NA coding upstream 424337 629012 ~ 632362 (+)
CI01000339_00620788_00628381 NA coding upstream 428318 620788 ~ 628381 (+)
CI01000339_00608255_00608718 NA coding upstream 447235 608255 ~ 609464 (+)
CI01000339_01072565_01078927 ZC3H12B coding downstream 13582 1072565 ~ 1079035 (+)
CI01000339_01103817_01114804 MOES, MSN, MSNA, MSN.L coding downstream 43676 1102659 ~ 1114902 (+)
CI01000339_01125117_01140044 NA coding downstream 65644 1124627 ~ 1140663 (+)
CI01000339_01149535_01169124 NA coding downstream 90337 1149320 ~ 1169841 (+)
CI01000339_01200161_01211991 NA coding downstream 141178 1200161 ~ 1212329 (+)
G480925 NA non-coding upstream 33828 1022663 ~ 1022871 (+)
G480911 NA non-coding upstream 104962 948832 ~ 951737 (+)
G480847 NA non-coding upstream 120980 935386 ~ 935719 (+)
G480846 NA non-coding upstream 124184 931221 ~ 932515 (+)
G480884 NA non-coding upstream 126287 930162 ~ 930412 (+)
G480933 NA non-coding downstream 42171 1101154 ~ 1101711 (+)
G480936 NA non-coding downstream 60195 1119178 ~ 1119448 (+)
G480910 NA non-coding downstream 129918 1188901 ~ 1191350 (+)
G480902 NA non-coding downstream 166459 1225442 ~ 1229357 (+)
G480761 NA other upstream 416322 634414 ~ 643423 (+)
G480663 NA other upstream 878716 177668 ~ 177983 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA other upstream 979107 69245 ~ 93266 (+)
G481321 NA other downstream 230338 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 515551 1571624 ~ 1577706 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 1137617 2196307 ~ 2198809 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 1761777 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 2028810 3088110 ~ 3091633 (+)

Expression


Co-expression Network