CI01000339_01200161_01211991


Basic Information

Item Value
gene id CI01000339_01200161_01211991
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 1200161 ~ 1212329 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_01200161_01211991.mRNA
GTGCTTTGCTGAAACACAAAAGAAAGAGGTCTCTGATAGACTGGGCTCTGAGGAGGGGACACTTTAACCAATCTGATGGCCAGTCTGACCCACAAACTGCCTCTCACAAGCTATTTGGTCAGTCTCTTTCTTCCATTTGTCCTGACGGAAACCTGCCCAAGCCAATAATGGACCTGCTATATCTGCTGTTCTGTGAGGGTCCAGAGACCCGTGGAATCTTTCGTCGTTCAGCAAATGCCAAAAACTGTAGGATCCTGAAGGAGCGAATGAATTCTGGGCAAAGTATTTCACTGCATGAACAATCAGTGTTCGTCTCTGCGTCTCTAATTACAGAGTTCTTACGGAAGCTGCCTGGTGGTGTTTTGTGCTGCGACTTATATGATGACTGGATTGAAGTGCTACAGAGTGAGGATCAACAGGATAGACTTAACAAAGTCAGAAGTTTGCTTGCACAGCTGCCGGAGGAGAATGTTACCTTGCTGTGTCACTTATTTGGAGTGCTACACAGGATACACAGTCACTCAGAGGTGAATCAGATGACAGCAATGAACTTGGCCCTTTGCATTGCACCCAACATGCTCTGGAGGACTTCCCAAATCAGCCCTGAGAAAGAGGGACAAAGTGTGTTGCAGTTCTCCCTCATTGCTCTTGGCGAGACACAGTTTAAAACCACTATCACCATAGGTTGTCATGCTGGAGAAAAATCCCTGAGCTATTACATTAACACAATTTTAAATAAGCACAAGCTGCTTCTGCCGTCTATTGCTTCACATCAGGCCAATGTGAGAGGGATTCGGGCCTGTTGACAAACTCTCACTCACTACCATGCAGTGTTTTTAGTGCTTATTGAAAATGCGAGAATCTGAGAGTCAAACATCAGTTAGAATGAAAACATCACTCAGAATGTGTAAAATGGCTTTATGCCTTAATTTTCCAGGAAAAGTGTGCATATGAATGCATAGCCACCACGGAGCTACATTACAACAACATATTAGTAGATTATTTGATTTTAATTAATTAGTTTTTATGAAAGCTTTTTTAAAAAACTGACATTTAAAAGAAGAAGAATGTGCAGCTTAAAATATCTTTTTTTTGTGAAAAATTAATATGAAAAAAAATAAAAAAAAATGAAATATGGAGTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_01200161_01211991.mRNA True 1144 mRNA 0.41 6 1200161 1212329

Neighbor

gene id symbol gene type direction distance location
CI01000339_01149535_01169124 NA coding upstream 30985 1149320 ~ 1169841 (+)
CI01000339_01125117_01140044 NA coding upstream 59498 1124627 ~ 1140663 (+)
CI01000339_01103817_01114804 MOES, MSN, MSNA, MSN.L coding upstream 85259 1102659 ~ 1114902 (+)
CI01000339_01072565_01078927 ZC3H12B coding upstream 121126 1072565 ~ 1079035 (+)
CI01000339_01056819_01058832 SHISA2 coding upstream 141178 1056699 ~ 1058983 (+)
CI01000339_01268083_01271372 NA coding downstream 55202 1267531 ~ 1271372 (+)
CI01000339_01279357_01283459 NA coding downstream 67028 1279357 ~ 1284488 (+)
CI01000339_01322827_01326830 RPL36A, RPL36AL coding downstream 110498 1322827 ~ 1326871 (+)
CI01000339_01369376_01372564 TNFSF10L4 coding downstream 157047 1369376 ~ 1372922 (+)
CI01000339_01422265_01423154 MTNR1C coding downstream 209936 1422265 ~ 1423154 (+)
G480910 NA non-coding upstream 8811 1188901 ~ 1191350 (+)
G480936 NA non-coding upstream 80713 1119178 ~ 1119448 (+)
G480933 NA non-coding upstream 98450 1101154 ~ 1101711 (+)
G480925 NA non-coding upstream 177290 1022663 ~ 1022871 (+)
G480902 NA non-coding downstream 13113 1225442 ~ 1229357 (+)
G480960 NA non-coding downstream 32687 1245016 ~ 1245326 (+)
G480961 NA non-coding downstream 33984 1246313 ~ 1247159 (+)
G481310 NA non-coding downstream 42912 1255241 ~ 1255565 (+)
G480761 NA other upstream 559784 634414 ~ 643423 (+)
G480663 NA other upstream 1022178 177668 ~ 177983 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA other upstream 1122569 69245 ~ 93266 (+)
G481321 NA other downstream 76992 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 362205 1571624 ~ 1577706 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 984271 2196307 ~ 2198809 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 1608431 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 1875464 3088110 ~ 3091633 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location