CI01000339_01279357_01283459


Basic Information

Item Value
gene id CI01000339_01279357_01283459
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 1279357 ~ 1284488 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_01279357_01283459.mRNA
TTCCTGTTAAGGAGACAAAATGGAAGCTGAAATCAACAATCGGCAAAAAATGGACTGATAAAGAGAGAACAGAAATGGCAAATTCTGCTTTATCAGCAGAAAAAAGAGATGCGCTGAAAGAAGATCATCAGAATATTAATGCTGCAGCGCTGCAGACAGAGGAAGAGACACTGACTGAGGAGAACGGCGTGCAAAAGGAGGATTTGAGCAAACAGATGAGTGAACACGAGAACATGAGACTCCTAGTGAACACAGTGATGGAAACCAGTAAACAAGAGGAAAAGGAAGCCAAACCAGAAAATAAAATAAAACGTCTGAGTGATCAACAACCAGGATGTTCAGATCAGAAATTACCGGACAATGACTCCCAGCTGGCTGTTCTAGTGGTGCTTCATCACACATTTGACCCAGAGAAAACTGTAACAGACAGCAGCAGATGTGTTACCAGGACAGACATACTCACAGTGGATTGTCTGTTCTTTGAGGATGAAGGATTACTGAAGTGTCAGAAGAATTCAGATGCATTTGGCAAAGTTGAGCATTGGTTAAAACAGCAGTGGTGGAAAACAGGTGCCAAAATATCTCACTGTCAAAAGGGGGTCAAAGTGTGCTCCATTTTGGCTGGAAAGACAAATAACTGTGACAAGGAATTTATCACCACTCTGGGAAAAAAAATTGAGATTCTGGGAGAAGTTGCTACAGTGGAAGAGAGTAACATTATTTTGATTTTCTGTCCTATTGTTTCTCGAACTGGAACTGACATTGAAGCAGCACTGAACAAATTCAGTTACTCTGCAGACACTAAGCTGGCTGTTCTAGTGGTGCTTCATCACACATTTGACCCAGAGAAAACTGTACCAGACAGCAGCAGATGTGTTACCAGGACAGACACTCACAGTGGATTGTCTGTTCTTTGAGGATGAAGGATTACTGAAGTGTCAGAAGAATTCAGATGCAATTGACAAAGTTGTGTATTGGTTAATGGAACAGGTATTTATCAAGATGATCCAAAATATGAAAACTGCCATAAAATGTATCATTTAAAAAACGTCACTTGTAAACTCATGCTGTAATCATTCTTTTACAGGGGAGGAAAATGGGTGTCAAAATATATCCACATAAAAGTAGGTATAGATTAACTATAATCAATATTATTTGATTTCTGTTTGTTGTATGTCCTAATGCTCAGTAACACATTTTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGATTATTATAAACCATTTATGTGATGTGAATGAAGTAAAAGTCTACTCTATAGAGATCATGTTATGTACCGATGAATTATATCCGTTTTTGCATTTCTCTTCTAATATTTGCCTGAAACCTAAGAGATATAAAGCATTATAGAAATAATTAGGGTGTATAGCTATTAAATGGGTGTTTTATTGTTTACGCAAATTTTCCCTAGTGGTCAAAGGTGTTTGTTCCACCAGTTCAAAATACATTCATTTTCTTGACAGGTTACCATTGTGACTCCAGACTTAACTGCAAATTATTGTGTA
>TU552291
TCTGATTATTATAAACCATTTATGTGATGTGAATGAAGTAAAAGTCTACTCTATAGAGATCATGTTATGTACCGATGAATTATATCCGTTTTTGCATTTCTCTTCTAATATTTGCCTGAAACCTAAGAGATATAAAGCATTATAGAAATAATTAGGGTGTATAGCTATTAAATGGGTGTTTTATTGTTTACGCAAATTTTCCCTAGTGGTCAAAGGTGTTTGTTCCACCAGTTCAAAATACATTCATTTTCTTGACAGGTTACCATTGTGACTCCAGACTTAACTGCAAATTATTGTGTAATAAACATTCATTTTCATTTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_01279357_01283459.mRNA False 1924 mRNA 0.29 7 1279357 1284466
TU552291 True 322 lncRNA 0.30 1 1284167 1284488

Neighbor

gene id symbol gene type direction distance location
CI01000339_01268083_01271372 NA coding upstream 7985 1267531 ~ 1271372 (+)
CI01000339_01200161_01211991 NA coding upstream 67028 1200161 ~ 1212329 (+)
CI01000339_01149535_01169124 NA coding upstream 110181 1149320 ~ 1169841 (+)
CI01000339_01125117_01140044 NA coding upstream 138694 1124627 ~ 1140663 (+)
CI01000339_01103817_01114804 MOES, MSN, MSNA, MSN.L coding upstream 164455 1102659 ~ 1114902 (+)
CI01000339_01322827_01326830 RPL36A, RPL36AL coding downstream 38361 1322827 ~ 1326871 (+)
CI01000339_01369376_01372564 TNFSF10L4 coding downstream 84910 1369376 ~ 1372922 (+)
CI01000339_01422265_01423154 MTNR1C coding downstream 137799 1422265 ~ 1423154 (+)
CI01000339_01427858_01428632 VMA21 coding downstream 143286 1427752 ~ 1428966 (+)
CI01000339_01454076_01454375 NA coding downstream 168336 1452802 ~ 1454592 (+)
G481310 NA non-coding upstream 23792 1255241 ~ 1255565 (+)
G480961 NA non-coding upstream 32198 1246313 ~ 1247159 (+)
G480960 NA non-coding upstream 34031 1245016 ~ 1245326 (+)
G480902 NA non-coding upstream 50000 1225442 ~ 1229357 (+)
G480910 NA non-coding upstream 88007 1188901 ~ 1191350 (+)
G481316 NA non-coding downstream 8036 1292502 ~ 1294218 (+)
G481331 NA non-coding downstream 25046 1309512 ~ 1311591 (+)
G481318 NA non-coding downstream 27798 1312264 ~ 1314078 (+)
G481333 NA non-coding downstream 31939 1316405 ~ 1316875 (+)
G481334 NA non-coding downstream 32786 1317252 ~ 1317508 (+)
G480761 NA other upstream 638980 634414 ~ 643423 (+)
G480663 NA other upstream 1101374 177668 ~ 177983 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA other upstream 1201765 69245 ~ 93266 (+)
G481321 NA other downstream 4855 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 290068 1571624 ~ 1577706 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 912134 2196307 ~ 2198809 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 1536294 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 1803327 3088110 ~ 3091633 (+)

Expression


Co-expression Network