G480933


Basic Information

Item Value
gene id G480933
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 1101154 ~ 1101711 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU551882
GTAAGCCTGTGAAACAGCAGAACTAGAATACACACACACACACACACACACACACACACAAAAATGAAATGAATCACCTCATACTAAAGTCATTCCAAGAGTTGATAGTTACCATTAGAGACGCCTTCCAATAATGCAAACTCTGACACACACACAACACACCTGGGTTTCAAACATGTGGTTTCACAACCGGCTCTTGTTTCACAGTTGTGTTTTCAATACCTAATAGTCTGTTGTAATATTCTGAAGCACCAAAACATCTGACATTTAATAGAGAGAACAGCTTATTGTGTGAATATGAGAAAATCAGGATATGTGAATATGAAGTTGTGTGTAGAAATACAACTTCAAAGAGTAGTGTGTATAGTTAAGTATGCAGATGTAAGGAAGTGTGGATATGAAGGATTGAGGGACTTTGTGGATATTAGTAAGGGGACTGTGGATATTTGTGGAGTTAGTAAAGGAATATGTGGATGTAAAGCAGGCCATAAACAACATTGAAATTGAGAGGGACCCAATAATTAGATATGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU551882 True 532 lncRNA 0.37 2 1101154 1101711

Neighbor

gene id symbol gene type direction distance location
CI01000339_01072565_01078927 ZC3H12B coding upstream 22119 1072565 ~ 1079035 (+)
CI01000339_01056819_01058832 SHISA2 coding upstream 42171 1056699 ~ 1058983 (+)
CI01000339_00967161_00982676 NA coding upstream 118326 966938 ~ 982828 (+)
CI01000339_00787610_00792293 NA coding upstream 308803 787503 ~ 792351 (+)
CI01000339_00629012_00632222 NA coding upstream 468792 629012 ~ 632362 (+)
CI01000339_01103817_01114804 MOES, MSN, MSNA, MSN.L coding downstream 948 1102659 ~ 1114902 (+)
CI01000339_01125117_01140044 NA coding downstream 22916 1124627 ~ 1140663 (+)
CI01000339_01149535_01169124 NA coding downstream 47609 1149320 ~ 1169841 (+)
CI01000339_01200161_01211991 NA coding downstream 98450 1200161 ~ 1212329 (+)
CI01000339_01268083_01271372 NA coding downstream 165820 1267531 ~ 1271372 (+)
G480925 NA non-coding upstream 78283 1022663 ~ 1022871 (+)
G480911 NA non-coding upstream 149417 948832 ~ 951737 (+)
G480847 NA non-coding upstream 165435 935386 ~ 935719 (+)
G480846 NA non-coding upstream 168639 931221 ~ 932515 (+)
G480884 NA non-coding upstream 170742 930162 ~ 930412 (+)
G480936 NA non-coding downstream 17467 1119178 ~ 1119448 (+)
G480910 NA non-coding downstream 87190 1188901 ~ 1191350 (+)
G480902 NA non-coding downstream 123731 1225442 ~ 1229357 (+)
G480960 NA non-coding downstream 143305 1245016 ~ 1245326 (+)
G480761 NA other upstream 460777 634414 ~ 643423 (+)
G480663 NA other upstream 923171 177668 ~ 177983 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA other upstream 1023562 69245 ~ 93266 (+)
G481321 NA other downstream 187610 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 472823 1571624 ~ 1577706 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 1094889 2196307 ~ 2198809 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 1719049 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 1986082 3088110 ~ 3091633 (+)

Expression


Co-expression Network