CI01000339_02250288_02256537


Basic Information

Item Value
gene id CI01000339_02250288_02256537
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2249794 ~ 2256894 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_02250288_02256537.mRNA
ATTTAAATTTCAGAAAGATTGGCATGTAACACATGCTGAGATTGATTCCTTGGCCTTAGATTGATATGGCCCTAGATTTGTTATTCAAAAAATACTGCTGGAACTTGTTGGCATTGCGCTACTAGTCTTACTTTTACTTTCAGATTTTACCAGCTTCAGTAAAATATTTCTTTCAGTTTTTCCCTTTATTTTGCTGTTTTTATGTCAGTCCTATTGTCATTAGTGTACATAACCTGGAAGTATAATATTTAATGTCTTTTTTCCCCACTGAAGATAGGTGAAAAGCTGAAAAATGGTGAGACCACACTCAGGATCTCCTCGTTCCAAACACAGGTAGTACATTGCTGTAGTGTATATATATTTATATTTTATATAATTTTTAATGTTGATATATCTACCTAATTATCAATATAATGGTGACTTAAAATTTCACATTTGTTTCTCATACAGGCCCTTCTCTGACAACTACAGCAGCATGAATCACGAAGGACGATATGGCCCCCCTTCAAGAAGCCAGAGGGGTTTCAGAGGACCTCCCGGAAAAGCCTCACCAAGTTGGAGAGATAACAGTAGTGGACCACAGTCATACCCCAAAAGGCCCTCGCTCATGGGTGAACGCAGAGAACGACCACACGGACAGTGGATGCAGAACCAGGATCACTTCCATCCCTATCCCAGCTCACAGGATTCACAGCGGGGCCGCAGGAGGCCTTCTCCACCCCGCTCAAGCCGCCCTCCCCCAGTCCAGCACAGGCAGTCCCCACATGGTCCTATACATGGACCGCCTAGCCACAGAGCACCACTCTTCCATGGAAATCACCCTAGCCACACATCTCCATCTCGCCATTTCCATGGCCCTCCATCAGAAAGGCGGGTTCCTTCACCACATAGTTCCTTCAGGGGTCCCCAGCGACGCCCAAGCCCTCAGGAGCATGACAGGAGCTGGTGCCCTGCACCTCGTGACAGGCCCTTTGGCCGACCGGCACTTGGTGGGCACCACTGGAATGGCCCAGGAGGTTATCCTCACCCCCCTGGTGGGGATTTGCGGCTCTCCGGCCCACCCCAAAGGAAACCCAGAGAGTTTCATGGAAGGAGTTCATATCCAGAGAGAGAGAGATCAACGTGGGCCGCATGGAGATGTTGGAAGAGAGTCCCGGCGCCCCAGCATGGAATGGGCACACGGAGGAGGGGGTAGTCCACAGTCTCGGCCCCCTTACAGATCACCGGCACGAAGACCAGGCCCACCCCCATCTGGCTCATCATTCAGACCTTATCCACCTCTGCGACCTCAGGAAAGGCCCATTGGTCGGCCATTCAAGAGGAAGAGTCAAGAGTTCAGGCGTCCGCCGTCATCAAGTGGTTTTGAGCACGGGCCACCGAAGCGTTTCCGCAGAGAATTATCAGTGAGACCTCTTCCTCTCAGGGGCTTCCGAGGTCGTGGTTTGTCCCTCAACGATAAAAGTCGACTGCTAAAGGCACGGAAGTTTAGAGCAGAGTCAGTGGCCCGGTTCAAACTGCCCCCACCAAGAATCTCGGACAGAGTCCAGAAACACAAGCCTCAGACAGCACCAAAGAATGGCAAAGATTCTTCAGGAGTGCCACCACGCAAGATACCACTCAAAAAGATGCCGTCATCCAGAGAGTCATCCCCCAGCACAGTCTCCAAGACCGCAGAGCCTGAGAGGGAATCCGAAACAAAGATGGAATCCCGTCGCTCTGTGAGCGCACACAGCGTTCTTCAGTCCACTCATTCAGTCTGCGAATATCTGTTATTCACATTAGTGAAAGGAAGGCTGCTAAAGGCCAAGGTGAATCAGGGAAAATTAATCTACCAATTCAAACTGAAGCATGGAGATGATGGGCTTGCTTTGCTCTCTTCACCAATAGACAGGCGACTTTCACGTGACCTTGTTGTGGTTTCCCATTGGGAGGCAGGGCACAAACCCAGTACTAGTTCTAAGAACAATGCACCCTGGAGGAATAAGGCACCCAAGAACAAGTCTGAGGAATCAGAATCTCATGGAAATTTAACACTGAATGAACGCTTCACCAAACTACAGAGTCCTACAAGTTCTTCACAGGAACAAAAAGAAAGACGTCTCCCTAATATGGACAAAGAAATTGTGACATCATCTCATATTCAGGCTGAAAGGCCTAATTTCCGCTCAACTGTTGGAGTAAAGAGGGGACCAGCTCCTGATGGAGTTCTCAGGAAACCCTTAATGGGCTCTTTAATCCCAAGACCACCCTTCAATCAGAAGCCTGTCTTCAAAAAGAGTCAAAGTATCATGTCAAAGTACAAGAACTTGCAGACGTTGCGGCATAAAAACTACCTTCCTCCTGAGTTCAGTGCCAAACCTGCTCCAACTCACCAATTGGTATTTACCAAGGCTGCATCTGAAATTGCATACTTCCCTACCTAATAGTAAGTGAAAAAACAGTACATTAATATTACACACGCTCATACTATATAGCACATACTTTCTCAGCAGTCATAAAGAAATTACTTATTCAAAATAAGTACCTATTCAAGAGAGTATGCGATTTTGGATGCAGCCCAAGTATTTCTGAAAATGTTATTTATCTGGTTCTGGTGCGTTTGATGAGGGTTGGAGCTGAACTGCAGTGATGTCAATTTCGAGGAACAGAATTGATTGTCCCTTTCTTAAGTCAAAGTTATATATTACTGTGTGATATACAACATACTGTTGACCATCATAATTGGTATAATTTCTATTGATCTTAAAAAAAAATCTTACGGTTCACAAGAATTGTTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_02250288_02256537.mRNA True 2780 mRNA 0.47 9 2249794 2256894

Neighbor

gene id symbol gene type direction distance location
CI01000339_02221790_02222160 NA coding upstream 27049 2221790 ~ 2222745 (+)
CI01000339_02215633_02219758 TP53 coding upstream 30036 2215289 ~ 2219758 (+)
CI01000339_02200730_02206209 GPS2 coding upstream 43230 2200132 ~ 2206564 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP coding upstream 51710 2196307 ~ 2198809 (+)
CI01000339_02185977_02193758 CTDNEP1.L, CTDNEP1, CTDNEP1B, CTDNEP1A, DULDA, CTDNEP1.S coding upstream 55636 2185977 ~ 2194158 (+)
CI01000339_02263831_02268085 SLC25A15, SLC25A15B coding downstream 6937 2263831 ~ 2268748 (+)
CI01000339_02283051_02288143 MPDU1A coding downstream 26003 2282897 ~ 2288265 (+)
CI01000339_02332203_02335402 ATP6V1A coding downstream 74716 2331610 ~ 2335402 (+)
CI01000339_02355753_02358594 ZDHHC23A coding downstream 98265 2355159 ~ 2359747 (+)
CI01000339_02362904_02366296 NA coding downstream 105790 2362684 ~ 2366500 (+)
G481784 NA non-coding upstream 11085 2232241 ~ 2238709 (+)
G481810 NA non-coding upstream 20038 2229478 ~ 2229756 (+)
G481809 NA non-coding upstream 20392 2229122 ~ 2229402 (+)
G481762 NA non-coding upstream 73494 2173776 ~ 2176300 (+)
G481793 NA non-coding upstream 109315 2140270 ~ 2140479 (+)
G481780 NA non-coding downstream 2321 2259215 ~ 2261865 (+)
G481760 NA non-coding downstream 47167 2304061 ~ 2313540 (+)
G481771 NA non-coding downstream 60039 2316933 ~ 2324406 (+)
CI01000339_02369904_02370487 NA non-coding downstream 113036 2369319 ~ 2371316 (+)
G481860 NA non-coding downstream 175290 2432184 ~ 2432460 (+)
CI01000339_01571624_01576903 NA other upstream 672091 1571624 ~ 1577706 (+)
G481321 NA other upstream 959061 1289321 ~ 1290733 (+)
G480761 NA other upstream 1609417 634414 ~ 643423 (+)
G480663 NA other upstream 2071811 177668 ~ 177983 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 563866 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 830899 3088110 ~ 3091633 (+)
G483672 NA other downstream 2970429 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 3343567 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 3784923 6041817 ~ 6044034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location