G481760


Basic Information

Item Value
gene id G481760
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2304061 ~ 2313540 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU552838
TTAATAATGAGAAGAAAAAGGAAAGAGTTTGACGAGTTAAGCTGTAGCTTTATTGAAATTTCCCCCCTCCTCCAAAAAACAAAATACACTTACAAAATAACTTAAATGTAGAAAAAAAAAATTAAATCCAATAATGTTGAAATATCTTTTTTTTTTTCCTCCACATTTGTATACCACCTTCAGTCAAAGTTAATCTGAGTAAGGACTTCCAAATATATAAATTCAGGAAGCCCACAATACTCAGACATCTTATATCATATACTGTTCAAGAGTGATTAGATAGCTCTGGCACAGTTTTATAGCAAACAGTACAGCAAGCAAGTGCAGTATCTACTTGGATCTTATAGTCCCAGTAGCAGGATTCGAAAGAAATGTATAAAATATTTCTGATGCTTTTCATGTTGGTTTAAAAGCAAGCACACTTTTACCACATGGCCCAAGTACATTAGTAACATGTGCTTTAAATAAACAATGCACGTCAATGATGATTCCCAACTTTAAAAAAAAAAAAAAAAAGTTTAGGAGGACTAATCGAGAGGAGAGTGACAGACCATGCTGCTCTTCTCCATGGCTGAGCCCATATTTCACAATGTTTATTATGAGAGTTGATGGAGATAAATAGATGTATATTCAGCATCTGAGACTTATAAAATTTGTTCAGCTTCAGGGAAAATAAAATGACTAATTTGCAAATGTGGAAGAGCAGGGAGTTGCACATACCCTGCTCCATTTAGAAGTGCTTAAACTTGAAAATAATGCAAGAGAGATTATGGGGATAGAGAGAGGGGGGATGTATCTAGATCAGGTCAAGTAAATCTCTAGATCAAGTCAGCCACATTCATGGGCATCTCTTCTACGGTAGTGTTGTAGAAGGTCTCGATGTCCCGCAGAGTACGCTTGTCATCCTCTGTCACCATGTTGATAGCCACACCTTTCCTGCCAAAACGGCCTCCTCTACCAATCCTGAGTGTTTCACAAAAAACAACAACAACAACAACAACAACAACAACACATCATTCGCGATCTAAACCTTAATTTTGAGCTGCTAAACAGTAGAGATCGTTCAACGTCAACGTCAATATCCTCAAGCAGGCCGGGCTGCTAAGAGCTCATATGCTAACGCCAGTGGGTTTTTACTACTCATTTACGACATTCAAGATCACGAATCACAAGCTACTTCCAACAACATCTAGAAGCGGAATGCCTATGGCGACTGACAATGTGTACGTATAAGATCCCCAATTTATAAACAAATACATTAAGATCGTTAAATTCCTGTTGTCCTACCTCCCTTCATATTCTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU552838 True 1305 lncRNA 0.38 2 2304061 2313540

Neighbor

gene id symbol gene type direction distance location
CI01000339_02283051_02288143 MPDU1A coding upstream 15796 2282897 ~ 2288265 (+)
CI01000339_02263831_02268085 SLC25A15, SLC25A15B coding upstream 35313 2263831 ~ 2268748 (+)
CI01000339_02250288_02256537 NA coding upstream 47167 2249794 ~ 2256894 (+)
CI01000339_02221790_02222160 NA coding upstream 81316 2221790 ~ 2222745 (+)
CI01000339_02215633_02219758 TP53 coding upstream 84303 2215289 ~ 2219758 (+)
CI01000339_02332203_02335402 ATP6V1A coding downstream 18070 2331610 ~ 2335402 (+)
CI01000339_02355753_02358594 ZDHHC23A coding downstream 41619 2355159 ~ 2359747 (+)
CI01000339_02362904_02366296 NA coding downstream 49144 2362684 ~ 2366500 (+)
CI01000339_02369904_02370487 NA coding downstream 55779 2369319 ~ 2371316 (+)
CI01000339_02520632_02526538 DGCR8 coding downstream 205858 2519398 ~ 2526904 (+)
G481780 NA non-coding upstream 42196 2259215 ~ 2261865 (+)
G481784 NA non-coding upstream 65352 2232241 ~ 2238709 (+)
G481810 NA non-coding upstream 74305 2229478 ~ 2229756 (+)
G481809 NA non-coding upstream 74659 2229122 ~ 2229402 (+)
G481762 NA non-coding upstream 127761 2173776 ~ 2176300 (+)
G481771 NA non-coding downstream 3393 2316933 ~ 2324406 (+)
G481860 NA non-coding downstream 118644 2432184 ~ 2432460 (+)
G481851 NA non-coding downstream 195809 2509349 ~ 2511174 (+)
G481855 NA non-coding downstream 239383 2552923 ~ 2555109 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 105252 2196307 ~ 2198809 (+)
CI01000339_01571624_01576903 NA other upstream 726358 1571624 ~ 1577706 (+)
G481321 NA other upstream 1013328 1289321 ~ 1290733 (+)
G480761 NA other upstream 1663684 634414 ~ 643423 (+)
G480663 NA other upstream 2126078 177668 ~ 177983 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 507220 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 774253 3088110 ~ 3091633 (+)
G483672 NA other downstream 2913783 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 3286921 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 3728277 6041817 ~ 6044034 (+)

Expression


Co-expression Network