G481771


Basic Information

Item Value
gene id G481771
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2316933 ~ 2324406 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU552859
GTACACACCTATATCTCTTACCCTTCTTGTAATGTTGATGAATCGGAAATGTTTAATTATCATAAAACACACTCAAACCATCTCAATATAATGTCTTTTACACAATATGACCAGTGCACCCATTCGTCATGTATTACCATTCAAATCTTTGGGGTCAGTTAGAAATTATACTAGAAATTAATTTAGAATTTTTTTTTTTTTCATTTAGAGAGCAAGGAGATTTCAGTAGGAAATCCTTTATTTATTTTTTAAGAATGGGAAAATCAACACTAAAAACAAGTTTATCTATAGCCGGTTTGGGTTAAAATGCTTTTATAGTGATTTTCCCGACTTTAGAACAAAGTAGTACATACAAGTGGTAACTAGTGATACTACATATGAATATACCAGAGAAATTTCATCAAGAACATCAAACTTTATCCCACTTCCTATTAGCCAAACACACTGCATCGCTGTCCTGAGTCACCAGTCGCCTCAAAGAACATGAAGTCCTGCAGGACAACACAGAAAAACAATAAAATTAAATGTATGATTGGCCATATAAAGAAAGTAATGGGAATATATTGGTGGATGAATAAATGTTTTATGTCATATCTCACTATAAGGAAACATGCTCCCAGCAGAACTGCTTTCATCCTCACGTCCAGGTCCATGGGAAAGTTAATGCCAAAATTATCTGAATCAGTCAGTGACTCTTTGATCAGGCCAGTCCACTGTTTACTGATACGACCAACTGGATGCCCGTCCTTACCGGTAACCTGCACCAGAGGACAGACAAAAGCACATGACCTTTGGTCAAACTATAAATTTTTTTTTTTTTTTGTAAAAAACTAAACATAAAAATATACACTAAACAATTGTGCAATCCCAAAATAATCATCCACCAGATACTGTGTTTCAGTGTTTCGCAAACAATCATAGACACACATAGAAAGACGATAAACTGACAAAATCACACATGAACACATACATCAAAATCCACATCCCCACAGCAGCTGACAGCACACGCAGGCCCCTCGATGGACAGCACCTTTGTATTGGACATGTCATAGATAGAGAACATGGGCCTAAACACATGCCAGTCTTGCTTGATGTAGCCTATTGTATTCCCTGGTGGAGACTGCACTTCCATCTTCAGTCAGTGGCACATCCACACAGGAAAAAGAATTGGTAAAGGGGTTATATTAATATATATATATATATATATATATGTAAATTTTGCACTTGTCAAATCTGTCTTTTTCTCTCACCAAAGGTCAGAAAACTCTACACAGAATTTCAGTTATTACCTCTTGAAGACAGCAAGGGAAACAGCAGGACATGCAGCGGTAAGGCCTGATTAAGTGAATCACTTCCTGGTCAAAATTATCTGTTATCTGCAGATCAAAGCTCCTCAGAGGACCACAGATATTCCGTGTGCAGCAGTCAGTGTTTTCTTTAGCATGGAAGATCTTTTGGCCCATGCTGTTCTTAATCTCATACTGATTATTAGTCTCAAAGCCAATAATGGCTGGGGAAAAAAAAGAGAATTTGACTATTTATTTAGTGACAACAGTCTTCAAAAACAAATATGTATATAATACGTTCAAAAGTTCAGTCGGTAAGACTTGTTATGTTTTTAAAAGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU552859 True 1628 lncRNA 0.36 2 2316933 2324406

Neighbor

gene id symbol gene type direction distance location
CI01000339_02283051_02288143 MPDU1A coding upstream 28668 2282897 ~ 2288265 (+)
CI01000339_02263831_02268085 SLC25A15, SLC25A15B coding upstream 48185 2263831 ~ 2268748 (+)
CI01000339_02250288_02256537 NA coding upstream 60039 2249794 ~ 2256894 (+)
CI01000339_02221790_02222160 NA coding upstream 94188 2221790 ~ 2222745 (+)
CI01000339_02215633_02219758 TP53 coding upstream 97175 2215289 ~ 2219758 (+)
CI01000339_02332203_02335402 ATP6V1A coding downstream 7204 2331610 ~ 2335402 (+)
CI01000339_02355753_02358594 ZDHHC23A coding downstream 30753 2355159 ~ 2359747 (+)
CI01000339_02362904_02366296 NA coding downstream 38278 2362684 ~ 2366500 (+)
CI01000339_02369904_02370487 NA coding downstream 44913 2369319 ~ 2371316 (+)
CI01000339_02520632_02526538 DGCR8 coding downstream 194992 2519398 ~ 2526904 (+)
G481760 NA non-coding upstream 3393 2304061 ~ 2313540 (+)
G481780 NA non-coding upstream 55068 2259215 ~ 2261865 (+)
G481784 NA non-coding upstream 78224 2232241 ~ 2238709 (+)
G481810 NA non-coding upstream 87177 2229478 ~ 2229756 (+)
G481809 NA non-coding upstream 87531 2229122 ~ 2229402 (+)
G481860 NA non-coding downstream 107778 2432184 ~ 2432460 (+)
G481851 NA non-coding downstream 184943 2509349 ~ 2511174 (+)
G481855 NA non-coding downstream 228517 2552923 ~ 2555109 (+)
G481899 NA non-coding downstream 320394 2644800 ~ 2652322 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 118124 2196307 ~ 2198809 (+)
CI01000339_01571624_01576903 NA other upstream 739230 1571624 ~ 1577706 (+)
G481321 NA other upstream 1026200 1289321 ~ 1290733 (+)
G480761 NA other upstream 1676556 634414 ~ 643423 (+)
G480663 NA other upstream 2138950 177668 ~ 177983 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 496354 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 763387 3088110 ~ 3091633 (+)
G483672 NA other downstream 2902917 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 3276055 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 3717411 6041817 ~ 6044034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G41822 NA non-coding CM030125.1 CM030125.1 18295645 ~ 18295946 (+)
tiger barb (Puntius tetrazona) G35384 NA unknown NC_056703.1 CM032072.1 10923927 ~ 10926163 (-)