CI01000340_10626938_10643520 (FANCD2)


Basic Information

Item Value
gene id CI01000340_10626938_10643520
gene name FANCD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10626821 ~ 10644213 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_10626938_10643520.mRNA
ACTGTGGGCGGTGTGATATGCAGTGACCAATCATTGCAAGACTCTCCACGCCCACTTTTAATACACGCCCATAGAATATAAGGGAGTGTCACCAAAGTGTTCAGTTCGCTACGTCACGGTCGAAAATGTTTATCTTATTATCTGTGGGCCTGATGACGTGTTGTTTGATGTATTTTGTACTTTTATTCTCATAGAGATGGATATAGTTAACACGTAAAATATACAGTAACGTCCCAAAACATTTTTTTTATCAATCCAGAATTGAGAATTTTACCACGACCCTTAAAATTTACGAACCACGGGCGCGGGAAGCTTTGTGACATTAGCCTGGTTATGAAAACATACATTTTATGCTAGTCTAAATCTATTAACATAACATCTAAACGACAAACGTTTAAGACCAGCATCGCGGGGAGTAACTTTAAGGTAAACACTTCTGACGACGCTTTGACTCAAATACGGTCATTTCGTCGAGTTCGTCGACTGTATAATTTAGCCATTTCAGTCTGTCTTGAAATGATTGTTTACCATCTTCCGAAATGGGTTCTGGTATTGTTTGAATCAGGACTGTCATTATTGAACTGTCAGTTGTGTACAGACTTAGAGTGCTTTAGCCCATGTGAAATAGCTTATTTGTTGTAACCCTAACAGGTATCATCTTATAATTTCACTCTGATCTGATCTGAGCTAAAGATGATGCGTAAGAAGAAGCGCTCATCCATCACAGTGGACGAAGATTCCACACTTGACATTCCAAAATCAAAAAAGACCAAGAGCAGTGGGCGACCCACAAAGTCTTCAGTACAGGACTCCTACCCGGACTCAGTTTTTGTTCAGTTTCTGAAGGAATCAGGTGTCACTTTAACACCTGGCAGTACGGCTAATGAAATTGATAATTCAGGAGTTTATATCTGCGCTGGAAACTTACATCGAAGACCCAGAGAGATTCAGAAACTGTCTACTGCCTTGTGTGCCATCATCCACTTCACAGCAGGATACCACGAAAGCCTGGTACGCTTGTTGCTTGGAATAGAGATGCTACAGACCCTGGTCATAAACACTTTGTTTGAAAAGCTTCCAGAGTTCATGTTTGAGGGTGTTAGTGAGGATGGCCTCAACGTTCCCCGTCTCGTAATAAACCAGTTAAAGTGGCTGGACCGAATTGTAGATGGCAAGGATTTGAGCAGTAAGCTGATGCAGATGGTGTCTGTTGCTCCAGTGGAGATCCAGCGGGACATTATTACCAGCCTCCCAGAAATCCTGGAGGATTCCCAACATGGAGACATGGCCAAAGAGTTGAACGAATTACTTCAGCAGAACACTCAGCTCACTGTGCCTATATTGGATGCTTTATCCAGCTTGAATCTGAGCTCTGCGTTATTGTCAGAGGTACGTGAGGCAGTAATGGGAACTCTCTCTGCTGTGCAGTTAGAGGATCTTCCTGTCGTAGTGAAGTTCGTCTTACACTCCATCTCTGCATCTGATGCTAATGAGGTGGTGTGTGACCTGCGCAAAAAGCTGGAGTTGGAGCAGTGTGTTTTGCCAGCAGTCCTGCAGGCCTCCCAGAGTCGTTTGAAAAGCAAAACCTTGTCAGGGAAATCCAGTGTCCCATCATGCAGCAATGGTCAGGACAGTGTGGCTTTGATTCTGGAGGTCATAAAGTCAGCTATCCGCTTTCAGAAAACCATCTCAGAGGCTTGGCTAAAGGCCATAGAGAATGTTGATGAGTCAGAGGACCATAAGGTGGTTGATCTGTTGGTGCTGTTCATCCTTCACTCCACTAATGCAAACCACAGCCGACGTGGGGCGGAGAGGGTGCTCAAGGTCAAAGTTCGCAAGGGTCTGATTCAGGAAAGCCTCTTGCAGAAGACCTTTAAGGGCCATGCTCAGGTGATGCGGGGTTATTTCCCATCCATTCTGGCTCTAGCTCAAGGACTCTTGCGTTCTTCAGACTGCTGTGTGGTGCCTTTCGGAGGTCACATGTACAAACAATCCTTCACTGCCTTTGACTCCTACTGTCGGCAGGAGGTGGTGGGCTCTCTGGTCACACACGCATGCAGTGGTGTGAGTGGTGAGGTGGATGTAGCTCTTGAGCTGCTTTGTGAGCTGGTATCTCAGAGACCTGCAGAGATGAGCCAGTTCACAGTTTTTGTGAAGGGTATTCTGGACTACATGGACAACCTGACCTCACAGCAGATCAGACAACTCTTCCACCTGCTCAGCCGCCTGGCGTTCGGACAGGAGCAGCACGGGGGACACATCCAGGATGACATGCATATCGTAATCCGTAAGCAGCTGTCTAGCACGGTGCCCAAGTACAAGCGCATTGGTATTATTGGGGCAGTCATGATGGTGGGCAGTATGGGAGCCTGCAGAAATAAACCTGATGGCTCTCAAGGTGGCACACTACCCACTGAGACACACAGACAGGTGATGGCTCTGCTGGAGCTGGTGCGCTCGTGCAGTGAGACTTCCCCTGAAGCTGCTGCTCTCTGTTATGATGAGCTGGCCAACCTGCTGCAGACCTGCAAACTGGACCCTCTAGTGCTGGCATGGATCGGGAAGAGTGTGTTAGAGGATTTTCAGGAAGACTTTGTTGTAGACCTTGGACCAGATTTATCAGGTCCGTTTATGTTTCCTGCTTCTGTGATGTATAATTTGGACGAAGATGAGAGTCAGGGGGGAATCGCCATCAATCTACTGCCTCTTATGACTCAAGACCAGCAGCACAAAACAGACACAACCCAACCAGCTGGAGTCAAGAGAGAGAGGTGCGTGTCTCCTCTGTGCCTGTCCCCATTTTTCCGCCTGCTGAGATTGTGTGAAGAGGTGCAGCACCAGGGGGATCTGGAGGAGATTGATGCTCTACTAGGCTGTCCTCTGATCCTGACTGATATGGAGGTGGTGGAGAAGGTGGAGAGTCTGTCTAAGGCTGAGAGAGAGTTCCTCTGTTCTCTGCTCTTTCACACCATCAACTGGTTCAGGGAGGTGGTGAATGCGTTTTGCAGGCAGAACGATCCTGAGATGAAAATGAAGGTTGTAACTCGTATTCAGAATATCACTTTCCTTCAGAGTTTACTGCAGACGTGCTTGGCAGCTACACCAGGCTACACTCCTCCTCAGGCTAACTTTGATGGAGAGAGTGCTGAGGGGATGATACCCTCTTCTTCAATCGCTCCGCCAAAGAAAGGAAAGAAAGAGTCATCTGGGAAGAAGAGGAAGGCCTCAGCGAGTAAAAACTCCTCAGGCGACAAGTCACAGCTGGAGGCGGCTGCAGAGGCAGAGGAGTCCCAACAGGACCATCCAGAGAAAGAGAGCGAGAAAGAGAAAGAAAAAGATGCCAAATCAGGGGTCAGTCTGTCTTCGTACTGGCCATTCTTCAGAGAGTTGGATATTGAAGCTCTGAGCGTGCTACAGTGTGGCCTTCTGTCCCGGACACTGCTGGACACTGAGCTACATAGTAAGTTAAGGGAGGAAGTGCAGTTGGGCCCTGCTGAGTTGCTTTTCCTGCTGGAGGATATGTGGCGTAAACTGGACTTCAGTTTGGCTTCTGCTCCAGCCAAAAAGGCTCCATTTCTCAAAAGTAAGACGGACAGAGCAGTGGGCTTTGCTCACTTGCAACAGAAAAATGCCAAAGAAATCGCCACCTACTGCATTAAGCTGCTGCCCACACTCTGCACACACCTGGAGAACTGCCACAATCATTTTCAGACTCTGCTCTCTGAGAATCAGGGTGTTGTTGATGCTCCTGGTGTGGACGTGAAGGAACAGCAGCTCATGTGTTCAGCTTATCAGCTGCTACTGCAAGTGCTACACACCACGTTCAGCTGGGCCGGCTTTTCTGGTCTGGAGCATCGTGCTCTGCTGAAGAATGCTCTGGGGGTCCTGGCCGGCCGGCTAAAAGAGGACGAGACAGATTTGACTTTGGATCAGCTGAGCAGGCATGCTTTTGAGTACCTGCAAAACTTCCGAAGCACAGTGCCCAGCCTGAACACAGCCCTATGTTTGACTCAGCTGCTCATTGTGCTGTCCCAGTATGGAGGATCAAACCACAGGAACTACAGAGAACAGATCACATCCCTGACAAGACGTTTCCTCTGTCAGGAGTGGGTTACAGCGAGTGGAGAAAAAGAGCGAGGAAACAAATACAACGATGCTCTTCAAACTCTCCTTAGTATTTATCTAGAGCACACTGATGATGTTCTGAAGGCAGTGGAGGAAATAGCAGGTGAGGGGGTTCCTGAGCTGTTGAATGCTGCTAAAGACGCTAACTCGCGCAGCTGGCCAACACTCAACAGGCTGACGTTCCTGGTTTACTACAAGAGCATGATGGCAGAGCTAGAAAGAGCTGTACGCAAGATTCCTCCCAGCAAACAGATGGATAATCAAGAGATCTTTGACAGCAGACCTGTACTCACTGTGTGTTTGAAGTACGGTCGTCTTTTTCTGGAGTCGTTCCTCAAGCTTGGGATGCCTCTGCTTGACTACAGTTTTAAAAAACACAAGGAGGATGTCCAGAGTCTACTGAAGACCTTCCAGCTCAGTACTAGACAACTCCACCACATGTGTGGTCATTCAAAGATTAGGCAAGATACTGGTCTGACCAATCATGTTCCAGCCTTGAAAAAATGTCTGGAGCAGTTTGTATATCGCGTGAAAGCCATGCTCACTCTTAACCACTGTCAAGAAGCCTTCTGGCTGGGGAACCTAAAGAACAGAGACTTAAAGGGTGAAGAGATTCTCTCACAAAGGTCACAGGCAGCTGATGAAGAGGAGGAGGAAGAGTCCTCTCAGTTGCAGAGTGAAGTGGAGGAGAGCGACTCTGATGAGAAGAACAATGGACAGGAAGAAGCAGAGGAATCAGATGAATCAGACTGAAATAAGCAAGCATTGCTGTACATTAGCACATGATCAGTACACTATTGTTGCTTTATTATTCCTTCAAATTATTTTGGGGATTTATTATCTTCATATTAAATGGAAAAGATAAATAAA

Function

symbol description
fancd2 Predicted to enable DNA polymerase binding activity. Acts upstream of or within negative regulation of apoptotic process. Predicted to be active in condensed chromosome and nucleus. Is expressed in brain; eye; immature eye; and lens. Human ortholog(s) of this gene implicated in Fanconi anemia; Fanconi anemia complementation group D2; and breast cancer. Orthologous to human FANCD2 (FA complementation group D2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000793 condensed chromosome cellular_component

KEGG:

id description
K10891 FANCD2; fanconi anemia group D2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_10626938_10643520.mRNA True 4995 mRNA 0.47 41 10626821 10644213

Neighbor

gene id symbol gene type direction distance location
CI01000340_10557213_10612562 NA coding downstream 14259 10557213 ~ 10612562 (-)
CI01000340_10504461_10536413 GRM2A, GRM2 coding downstream 89128 10504353 ~ 10537693 (-)
CI01000340_10497000_10501726 PARP3 coding downstream 124244 10496636 ~ 10502577 (-)
CI01000340_10485958_10487241 NA coding downstream 139491 10485925 ~ 10487330 (-)
CI01000340_10473924_10477962 NA coding downstream 147781 10473869 ~ 10479040 (-)
CI01000340_10648767_10660257 USP4 coding upstream 4335 10648548 ~ 10660257 (-)
CI01000340_10664417_10665925 EMC3, POB, EMC3.L coding upstream 19891 10664104 ~ 10665925 (-)
CI01000340_10667602_10671566 SC61A, SEC61A1.S, S61A1, SEC61A1L, SEC61A1 coding upstream 23319 10667532 ~ 10671566 (-)
CI01000340_10690474_10697545 IP6K2, IP6K2A coding upstream 45719 10689932 ~ 10699591 (-)
CI01000340_10924696_10934000 EDEM1 coding upstream 280171 10924384 ~ 10934000 (-)
CI01000340_10468562_10470670 CAV3 non-coding downstream 154983 10468063 ~ 10472083 (-)
G492047 NA non-coding downstream 272872 10350057 ~ 10353949 (-)
G492050 NA non-coding downstream 286890 10329861 ~ 10339931 (-)
G492037 NA non-coding downstream 390544 10235847 ~ 10236277 (-)
G491908 NA non-coding downstream 403999 10137245 ~ 10222822 (-)
G492343 NA non-coding upstream 35105 10679318 ~ 10679596 (-)
G492364 NA non-coding upstream 108515 10752728 ~ 10752946 (-)
G492371 NA non-coding upstream 137170 10781383 ~ 10784905 (-)
G492381 NA non-coding upstream 143754 10787967 ~ 10788183 (-)
G492356 NA non-coding upstream 149046 10793259 ~ 10797269 (-)
CI01000340_10357202_10357606 NA other downstream 264417 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 598838 10025656 ~ 10029589 (-)
G491712 NA other downstream 1827244 8799201 ~ 8799577 (-)
G489511 NA other downstream 4299449 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 4406179 6095704 ~ 6194501 (-)
G493109 NA other upstream 1029533 11673746 ~ 11677994 (-)
G493266 NA other upstream 1422964 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 1968003 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 3569135 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 3902786 14546999 ~ 14552983 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033092 fancd2 coding NC_007117.7 CM002890.2 42291308 ~ 42336995 (-)