CI01000340_10667602_10671566 (SC61A, SEC61A1.S, S61A1, SEC61A1L, SEC61A1)


Basic Information

Item Value
gene id CI01000340_10667602_10671566
gene name SC61A, SEC61A1.S, S61A1, SEC61A1L, SEC61A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10667532 ~ 10671566 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_10667602_10671566.mRNA
TTAAATTCCTGGAGGTGATAAAGCCTTTCTGTGCTGTTTTACCTGAGATCCAGAAACCAGAGAGGAGGATTCAGTTCAGAGAAAAAGTGTTATGGACCGCAATCACCCTGTTTATCTTTCTGGTCTGTTGCCAGATTCCCCTCTTTGGAATCATGTCTTCAGACTCAGCAGATCCATTTTACTGGATGAGAGTGATCTTGGCATCCAACAGAGGAACTCTGATGGAGTTGGGTATCTCTCCCATTGTGACGTCTGGTCTAATCATGCAGCTGCTGGCTGGAGCTAAAATCATTGAGGTTGGAGACACACCTAAAGACCGAGCACTCTTCAACGGAGCTCAGAAGCTCTTTGGCATGATCATCACCATTGGCCAGGCTATTGTGTATGTTATGACTGGCATGTATGGAGACCCTTCAGAGATGGGTGCTGGAATCTGCCTCCTCATCATCATCCAGTTGTTTGTGGCCGGTCTGATTGTGTTGCTGCTGGATGAGTTGTTGCAAAAGGGTTATGGTTTGGGCTCTGGTATATCTCTCTTCATCGCCACCAACATCTGTGAGACAATCGTGTGGAAAGCGTTCAGCCCAACCACAGTCAACACAGGAAGAGGTACTGAGTTTGAGGGAGCCATTATTGCTCTGTTCCACCTGTTGGCCACTCGTACTGATAAAGTACGAGCTCTGAGAGAGGCCTTCTACAGACAGAACCTGCCCAACCTCATGAACCTCATCTCTACAGTCTTCGTCTTTGCTGTGGTCATATACTTCCAGGGCTTCAGAGTCGACCTCCCTATCAAATCGGCACGTTACCGTGGCCAGTACAACACATATCCCATCAAACTGTTTTACACCTCCAACATTCCCATCATCCTGCAGTCTGCACTGGTGTCCAACCTTTATGTCATCTCTCAAATGCTCTCCACTCGCTTTAGCGGGAACTTCTTGGTCAATCTGCTGGGGACTTGGTCGGATAGCTCAAGTGGAGGGCCAGCTCGTGCTTACCCAGTAGGTGGTTTGTGCTACTACCTCTCTCCCCCAGAGTCTTTTGGCACAGTTCTGGAGGATCCAGTCCATGCTGTCATTTATATCATCTTCATGCTGGGATCCTGTGCCTTCTTCTCTAAGACCTGGATTGAGGTGTCTGGATCCTCTGCCAAAGATGTCGCCAAACAACTGAAAGAACAGCAGATGGTTATGAGGGGACACAGAGAAACTTCTATGGTCCATGAACTCAACAGGTACATCCCCACAGCTGCAGCTTTTGGAGGCCTGTGTATAGGTGGTCTGTCAGTCATGGCCGACTTCCTGGGAGCCATTGGCTCAGGAACTGGAATTTTGTTGGCAGTCACCATCATCTACCAATACTTTGAGATCTTTGTGAAAGAACAGAGTGAAGTGGGCAGCATGGGTGCTCTACTCTTTTAGTACGGCCCTCACATCAGACTGAATGAATTTATAAGGTTAAGTTCTTTTATATGATTTTTGTTTTATTAAA

Function

symbol description
sec61a1 Predicted to enable protein transmembrane transporter activity; ribosome binding activity; and signal sequence binding activity. Involved in pronephric nephron development. Acts upstream of or within habenula development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of Sec61 translocon complex. Is expressed in several structures, including axis; digestive system; hatching gland; midbrain hindbrain boundary; and polster. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human SEC61A1 (SEC61 translocon subunit alpha 1).
sec61a1l Predicted to enable protein transmembrane transporter activity; ribosome binding activity; and signal sequence binding activity. Acts upstream of or within pronephros development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of Sec61 translocon complex. Is expressed in several structures, including EVL; anterior axial hypoblast; axis; ectoderm; and mesoderm. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human SEC61A1 (SEC61 translocon subunit alpha 1).

GO:

id name namespace
GO:0005829 cytosol cellular_component

KEGG:

id description
K10956 SEC61A; protein transport protein SEC61 subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_10667602_10671566.mRNA True 1494 mRNA 0.47 11 10667532 10671566

Neighbor

gene id symbol gene type direction distance location
CI01000340_10664417_10665925 EMC3, POB, EMC3.L coding downstream 1607 10664104 ~ 10665925 (-)
CI01000340_10648767_10660257 USP4 coding downstream 7275 10648548 ~ 10660257 (-)
CI01000340_10626938_10643520 FANCD2 coding downstream 23319 10626821 ~ 10644213 (-)
CI01000340_10557213_10612562 NA coding downstream 54970 10557213 ~ 10612562 (-)
CI01000340_10504461_10536413 GRM2A, GRM2 coding downstream 129839 10504353 ~ 10537693 (-)
CI01000340_10690474_10697545 IP6K2, IP6K2A coding upstream 18366 10689932 ~ 10699591 (-)
CI01000340_10924696_10934000 EDEM1 coding upstream 252818 10924384 ~ 10934000 (-)
CI01000340_10935675_10941448 ARL8B, ARL8BA, ARL8A coding upstream 263766 10935332 ~ 10941681 (-)
CI01000340_10951922_10954429 NA coding upstream 280268 10951834 ~ 10954436 (-)
CI01000340_10962027_10966453 NA coding upstream 290158 10961724 ~ 10967360 (-)
CI01000340_10468562_10470670 CAV3 non-coding downstream 195694 10468063 ~ 10472083 (-)
G492047 NA non-coding downstream 313583 10350057 ~ 10353949 (-)
G492050 NA non-coding downstream 327601 10329861 ~ 10339931 (-)
G492037 NA non-coding downstream 431255 10235847 ~ 10236277 (-)
G491908 NA non-coding downstream 444710 10137245 ~ 10222822 (-)
G492343 NA non-coding upstream 7752 10679318 ~ 10679596 (-)
G492364 NA non-coding upstream 81162 10752728 ~ 10752946 (-)
G492371 NA non-coding upstream 109817 10781383 ~ 10784905 (-)
G492381 NA non-coding upstream 116401 10787967 ~ 10788183 (-)
G492356 NA non-coding upstream 121693 10793259 ~ 10797269 (-)
CI01000340_10357202_10357606 NA other downstream 305128 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 639549 10025656 ~ 10029589 (-)
G491712 NA other downstream 1867955 8799201 ~ 8799577 (-)
G489511 NA other downstream 4340160 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 4446890 6095704 ~ 6194501 (-)
G493109 NA other upstream 1002180 11673746 ~ 11677994 (-)
G493266 NA other upstream 1395611 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 1940650 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 3541782 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 3875433 14546999 ~ 14552983 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017372 sec61a1,LOC107384934,LOC102228108,LOC106518493,LOC103023094 coding CM030122.1 CM030122.1 54813893 ~ 54820175 (-)