CI01000340_17668871_17688583


Basic Information

Item Value
gene id CI01000340_17668871_17688583
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 17668455 ~ 17689161 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_17668871_17688583.mRNA
AGAAATGAGCAACGAGAGAACATGGGAATTTTAGCGGGATTGTCTGAAGTGCCGCCCACTCCCTCTCTTTCCCGCACCTCTGTTTCTTCCGCCCTCCTAAACGCTTCCATCTGTTGTCTCACAAACCGGCTAATGTAGTAACTGGGCCCGATGCCTCTCACAAGTACACCCACTCTCACTGCGACAACTTCTACTTCGACTTGCACTTCAGATTTATCACAGAAACTGTAATTCGAAAGCCTAATAGGCCAAGAGCTCAGTGTAGTTTTAGCATAATATGACAAAAAAGGGCATTTTTGTTGTTACATTTTTGTAAGAAAAGATGTCTGCAGCTCCTGCACAGTACATTGTACTTACTATGTAAGTGCATAGTAGTTAAGCCCACCTAGTATAAAGTGGGACCCAAACTTCCCTTCAAATTGCCATAAGCATGTTGAACATGAATTGTGTTTGTACCTTTTGTGACAACACCAGCTGCATGAACCTGTCGATGTAGATATGCACGCTTTCGTTTGTCACCGGTATCATCTCAACTTGTGGATGTACTCTAGACTAACACAGCGTTGGACTTGCCAGAAATGGCAAAGACTGCTGAAACTGCACAGTCTACAGTGAGTCATCTACATCAGCTCATTCACACCATTAGTGTGGTGGACAGGGATGAACCGCAGTCTGGACATCGATTCTACTTCACGCTGGCACCCGAGGCCTCCAACAACCGCCACTTTACACTATGGGACATCAAGGGCGAAACAGAAACATCAGATCTGTTTGTTGAGTCTGACGTGCTGTTAGAAAAGAACTTCAAAAACCATCCGACCACTGCCTGTTGGCGTGCTTTTAGTCGAAACAGAACATATAGCGCAGGCAGAGGGCATTGTTCATTGTTACTCTGTTTGTTTGGGGATTTTTTTGGCATCGGCGACAACACAGCTGGCATTAGGACGCAGCGGTCTGGATTCAACCGTCAGGAGCAGAACGTGTACCTGTTGCCCATTCTGGTGGTGGACAGCGGCCCTCCGGCCCTCAGCAGCACGGGCACGCTCACCATCCACGTGTGCGGCTGTGACACGGACGGAGCCATTCAGTCCTGCAATGCCACAGCCTACGTCATGTCCGCTGCACTCAGCCCCGGCGCTCTCATCGCACTGCTGGTGTGCATCCTCATTCTCATAGTCCTGGTGCTGCTGATCTTGACCCTCAAGCGTCACAGGAAGGGCCAGCGCATGTCTGAAGACGAGGAGGACATGCGCGACAACGTCATCAAATACAACGACGAGGGCGGCGGTGAGCAAGACACCCAGGCGTACGACATGAGCGCCCTGCGCAGCCTCTACGATTTTCCAGAAGTCAAAAGCTCAGATTCAGGCCCGGACCTGCGCTCCGTCCCTCAGTGGATCCAAAACAGAGTGGTAGGAGACGGCGGGCCGGCTGACTTCTCGGTTTTCAAAGGCTACATACGCAAGAAGGTCGAGCAGGCGGACGCGGACTTAACGGTGCCGCCTTACGACTCGTTCCAGACTTACGCTTTCGAGGGCAGCAGCTCGCCGGCTCTCTCGCTAAGCTCCATCCGTACGTTGTCCACCACATCAGAGCAGGACTTTTCATACCTCAGCGATTGGGGACCACGCTTCAGGCAGCTGGCTGGATACTACGCCCCAGCCCAAGCTGAAGAAGAGGGGTCCTAGCACGCTCTCGGAGGCCCTTACATCCTGGTCCTGGAGTCATTTTTTCTCCCTGCCGCTTTTGCCCACAGTTCCGCAGTGACGCTTTTTTTGGTTCCCAGTCAGTCCAGAGAGTTTTAATGTCACCCGTTACACTTTGCAAAGTGACTTCTTGTCTTGTGGAAAAGTTCAGGACAAATATTGAAGGAGAAGAGCAGTAAGCCGGGTGCTGGGCAAACCTCCAACATCTTCTCACCTGTCAACGAGAGCAAGAAGAAGCGGGGCCGTGCCATATGCACTACACAAGACACTCATTGTTTCAGTTTTTTTTGTGATTTCTTTGCCCATCTGTGGAAATAAGGACTTTAACTCACTGGGATCTGGACGAAGACAATGGAAATGTCTTTTTAAATACCAACATTTAAAAAACCTTAAATAAA

Function

NR:

description
Cadherin-22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_17668871_17688583.mRNA True 2104 mRNA 0.50 6 17668455 17689161

Neighbor

gene id symbol gene type direction distance location
CI01000340_17451836_17453987 NA coding downstream 212472 17451452 ~ 17455983 (-)
CI01000340_17354694_17378496 EYA2 coding downstream 289959 17354254 ~ 17378496 (-)
CI01000340_17318768_17326504 CYP24A1 coding downstream 341911 17318100 ~ 17326544 (-)
CI01000340_17245510_17257329 NA coding downstream 410824 17244360 ~ 17257631 (-)
CI01000340_17190713_17213327 NA coding downstream 454979 17190397 ~ 17213476 (-)
CI01000340_17700896_17753828 CDH22 coding upstream 11664 17700825 ~ 17753828 (-)
CI01000340_17996222_18008569 NA coding upstream 306273 17995434 ~ 18010838 (-)
CI01000340_18013773_18027276 DDX27 coding upstream 324370 18013531 ~ 18027276 (-)
CI01000340_18030360_18041157 ITCHB, ITCHA, ITCH coding upstream 341084 18030245 ~ 18041157 (-)
CI01000340_18091595_18104080 CBFA2T2 coding upstream 401647 18090808 ~ 18104080 (-)
G496950 NA non-coding downstream 72291 17524882 ~ 17596164 (-)
G496932 NA non-coding downstream 178609 17489637 ~ 17489846 (-)
G496930 NA non-coding downstream 196694 17471557 ~ 17471761 (-)
G496925 NA non-coding downstream 197804 17470194 ~ 17470651 (-)
G496863 NA non-coding downstream 409311 17258684 ~ 17259144 (-)
G497021 NA non-coding upstream 89553 17778714 ~ 17820423 (-)
G497025 NA non-coding upstream 121725 17810886 ~ 17834517 (-)
G497037 NA non-coding upstream 180704 17869865 ~ 17870084 (-)
G497053 NA non-coding upstream 203742 17892903 ~ 17893315 (-)
G497054 NA non-coding upstream 211214 17900375 ~ 17900599 (-)
G496853 NA other downstream 425716 17177492 ~ 17242739 (-)
G496845 NA other downstream 622767 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 1148481 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 1488370 16171677 ~ 16178314 (-)
G495475 NA other downstream 2055892 15606741 ~ 15612563 (-)
CI01000340_18419431_18419838 NA other upstream 730157 18419058 ~ 18421201 (-)
G497442 NA other upstream 1469708 19158869 ~ 19166778 (-)

Expression


Co-expression Network