CI01000340_17996222_18008569


Basic Information

Item Value
gene id CI01000340_17996222_18008569
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 17995434 ~ 18010838 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_17996222_18008569.mRNA
ACTGGCAGCCTACTTGAGACATCATAACCAGGTGAGTGCTTAAGATCATCTTAAATAAGAATCGCTTTGTTTACAGTATTATCTGCATTTTATAGCTAGTGTCATTTGCTGTCGCCGCTGTTTTTATTCGTCTCAAAGAAAACAGTTTTTAGCCCGTTTTGTTTTTGCTAGCCTGCTTATTTCCGGTAAGTAGACAGTGCGCAGTCATTTAATTTTAAATGTATATATATATATATATATATATATATATATATATATGCGTGCGATATTAGGTTCTGTAGTCTATTTATATAGGCTACTATAGCGAGAAATGAAACTGATCGTTCACAGAGGAATATCAAGTTACATTCATCTGCTGTTTCCCACATCAATTGCTATGCGTAATGCTGATCAAAATACATTATACTTATACTTACATGCCATATAGTTTAAATCAGGAAATGCTGACAGAGTGCACTTATACTGACAACATGAATAAGCATTTTGATATCTTGTTTGTGAACAATGACACGAGGACTTTTCATTCTGATGCCACTGATACATATTCATTGGGATAAATAAATATTTACCTTTGAGAGATTAACTAAGGATTTTGAGCAGGTTACTTTTTGCATGTAATCCATTGTATGGTGCTGTTTGTACAAATTGTTTCGAGTAATGCACTCTGCAAAGAACCAACTATATGCATGTTCTGCAAGACCCCCCTTTCCAATAAACATATTTTATTGGACTGTCACACTTTTAATGCAAGTAGACCACATTTTTATGTAGTAAGCTCACTTAAGCACTTGTTTAGGGAGATTTTACCAGATTTTTCCTGCCTTTTTGTTTTTCCATTTTTTTTTTTTTTTTTTTTTTATTGTATTTATGCAACTCTTGTATTTTTGTAACTCTGTTTTTGTCATGAAGATGCTGACATGGCATTAAAAAAAAGCTATATTACTACTACTGCACATATTGGTTTGTAAATATTAAGGGTGATTCAAGACTCAAAATGCTGGGTTAAAAACAACCCAAGTTGGGTTGAAAATGGACAAACTTAGTGGTTGGGTTAAATGTTTGCCCAACATGCTGGGCAGTTTTATTTAACTCAAGTATTGATTAAAAATGACTGTATGTCTGGCTTAAAATGAACCTAAAATAGGTTGGAAATTAAAAATCAGACACATAATTGCTAGAGGCAACAATAATAATCAAAAGGTGAACATTTATTAATAAGCAATTTAATAAATGTTTATTGTTTAATTATTATTCATTAAACCTATTAATAAATGTTCATTTCTTAAACATATTAATAAATGTTAATTTCCAACATATTTTGGGTTAATTTTAAGCAAGTAAAACAGTAATTTTTAAACAATAGTTGAGTTAAATAAAACTATCCAGCAGGTTGGGCTAACATTTAACCCAACGGCTGGGTTAAAACAACCCCAATTGCTGGGTTTGTCCATTTGGGTTGAAAATGGACAAACCCAGCAATTGGGTTGGACAAACCCAGAACTTGGGTTGTTTTTAACCCAGCATAAAAAGTATGGAAGTCATTGCATTAGATCCAGGCTTTCAACTGCAGTGAATGTATTGGAGGGGTCTACAGAGAAGTTATATAACATTTTCTTCTTCATTATTTTTGGTATAATTGCCTTGCAGAGATATTAACAGCTGTATAATGGTCAATCCAAGAGGAGGAGGACAACAAAGAGGAAGAGGAGGCTTCCCTGGCCCTCAAAGAAGAGGTATCTTTCTTTTTGCTTCGTTACATTCCGTCTTTCAACTTGTCAATCAGTATACATCCTCATTAATTATACACCACAATTTTATTTTAACAGATGGTTCTGTGCCTGGTCAAAGACAAGCAAGTGGGTCTCCTAATCGAGGCAGAGGAGGTGGCCGAGGGGAGGGAGGAGGAAGAGGAGATGGAAGAGGAGATGGAAGGGGTCGAGGTCACCAACAAGCTGGTGGAAGTACAAACAGCCAAAGGGAAAGATGTCGGGATGAACAAGCACAAGGTGCAAGAGGAGGTGGAGGAGGAGATGGAAGGGGCAGAGGACCGAGAAGAGGAGAAAACAAGCCACATCATCAGGGGAATGCAATTGGGAATGGTGACCACCGCCCTGTGATAAGGGGACGCCCAACAAATGCACCCTTACGAGCATTTGGGAGACCTGGTTTTGGGTTCATTCATCAAAATGTTGTCAATTATTCTCTTCCGGATCCTCTGAATTCAAGCAACCGCTCTGAATACATATACCGCCAACAAGCCAGTGGAAACATGACTGGATTCACAAGTCAGAGTCGGTCCAAAAGTTGTTCCCGAGTCGGACCACACGGTGAAGAACGTCAAAGAGGAAGAGAAGAAGCTATGAGAGGTAGAGGGGGTCATGGGAGAGGAAGAGGAAGTGGGAGAGACGGCACACCTAATGTACGCAAACTGGGGTATAAAACGCTCGAAGGTCTTCTGGAGAAAGAAGCATCCGAGGTAGCCATCACCCTTTCATCTAACAGTGGGCTTAAGAATCTGCTTGCGGAAGATGAGATGAGAAGCGACTTGGTGCAGCTGATCTGTCAGGTTCTCTACAAGGCCTTCCAGTCTCGAATCGACCGCAAGATCGTGCTGCACTTGGCTGGCGTCGTCAAGGACTCAAAGTTTTTCCGTAACAACCTGCCGTGTCATGTGAATGGAATGACGTTAGAATACGTGCAGGCCCGAAGGGATCAGTATCCCCAACATTTGAGCAACATCATCAGCCTTCTCTCGGATGTCCTCAATATGTTTCCACAAAGCTCTGTCCAGTCTGTCTCAATGTTGGTGAATCTTTTGAAACCAACCATCAACCAGTTGCGTGCCTCTGGTGTGGATATTCTCGACAGTACCGATGAGGACTTGGAGAGGGTGGAGGGTTTGGTGAACCATCTCCAAGAGAAATCAAGGGAAGGCACCTTGCGGTCGGATAAGTACTCCTTCCTTGCAGATGATGAGGATGCCCCACCTGGGGAGGAAGACTTCAGGGTGATGAGCGTTTATCCAACCTTTGATGAGTTCCACCTAGACCAGAAGCCTTTCCTGAGACCCAACATAATGTCTCAAAGCTTCCCTAATGCTCGCATCTATCTAGACACGCACTTCCGACTTCTGCGTGAAGATTTCGTGAGGCCGCTGCGAGAGGGCATCAAGAAGCACCTCCAAGATAATCTAGATGGAGTACCAATAAAAAAGAGGATTTTTGATGACATCAGAGTTTACAATGACACCCGAGTGGTTTTGCCGCTCTGCACATCAACGGGAATCGCCTACAAGGTGCAGTTTGACCCACGGCCTCTTAAGTTTGTCCGGTGGGAAAATTCCAAACGTCTTCTTTATGGATCCCTTGTCTGTCTCTCCATGGACAACTTCCAAACCTTCCTGTTTGCCACTGTGGCCGATCGGGACCCTAAGCTGCTAAAGCACGGAGAGGTGAATCTCTCTTTTTCTTCTGACAGCAGAGCCAGAATGGCCATGGTTCAGCCCTCAGACTCCTTCCTGATGGTCGAGACTACGGCTTACTTTGAGGCCTACCGATACGTCCTAGAAGGTCTCCAGGAGCAAGACGGAAATGATGTTCCCTTTCAAAGGTACATAGTGGAGTGCAGAACAGATGTAGATCCTCCAGCTTACCTTCGGGTGCAGGGAAGGTCATACAATCTATCGTGCATTGTGGCAGAAGGGAAGGAGAAGATTTCACCCTTCAACCCCCTGACTCCACACGCCTGGCCTGATGAGGAAACAATGGGTCTCGATGAAAGCCAACTTCAAGCACTTAAACTGGCCTTAACCAATGAACTGGCCATCATACAGGGGCCTCCAGGCACAGGCAAGACGCATGTAGGACTAAAGATCGCTCAGGCTTTGCTAGAGAATCATGAGGCCTGGTCAAATGGTTGCCCTATGCTGGTAGTCTGCTACACCAATCATGCGCTTGACCAGTTTCTAGAAGGTATCCATGGCTTCTTAAAAAATGGTATTGTAAGAGTTGGAGGACGAAGTAACAGTGAAACTCTCAAGAGTTTCGGTCTGAGGGAGCTGACCAGGGCGGCAAACTTCCGGAGAGGTTTGCCACAGCACCTGAGGAGAGCCCATCATGAGATCTATACAGAGATGGAGGAAGCAGAGGAGCTCTTAAAGAGACAGACTGCCCAGCTCGAGTGCAGCTTGCGTGGCGTCCTCAAAGAAGACTTCCTGGAGAGATACATCTCTGCTCAGCACTGGGACAGCCTGTGTATACAGCCAGAATATGATGGATTTGAGAGAGCGGGGAAGAAGAAGCTGTCAATGATAGCGGAGTGGCTCGGCATCGGATCCAATGTGTTTTTGCAGGGGCTACAACTAACAGCTGGAGCAGAGGTGGCAGATGAAGACGGGCCACAACTGGAGGGTGAGGAACTGATAGATATAGATGAAGAGGCGGATCTGATCCAGGCGGAGAGGATATTGGAGGATGCAGATCACCGGGATAAAGACCATCTAAAACGGAAATGTGAGGAGAAAAGCATCGCTGCCATGGCTGAGATGATGTTGTCTTTGAACCTGAATGATACTGAACCTCAACCAGACCAAAGTCAGATTCAGAGCCAGACTCAGCCTGATCAAGAAGAATGGCAGATACAAGGCCACCAGAAGAAAAAAATGAAACAAATGGCTCGAAAAGAGCTGAGGAAGACTTCAACCATGCGCGAGGAACAGGAAAGGCATATCAGAGATGTGTGGAGCCTGAATCTGAAAGACAGATGGAAACTGTATCGTCTTTGGGTTTTGCGCTATCGGACTGATCTTCGTACTAAAGCCCTCGAAGCTGAACAGGTCTATCAGGATGCGGCGGATCGGCTGAATGAAATCCGTCGTCGTGAGGACCTGTTTGTGCTGAAGCAGGCTCAGGTCGTCGGTATGACCACCACAGGAGCGGCTAAATACAGACAGGCTCTGCAGGAGCTGCAGCCCAGACTGGTGATTGTGGAGGAGGCGGCGGAGGTGTTGGAGGCGCACACCATCACCACCCTCAGCAAAGCGTGCCAGCACCTCATACTGATTGGAGATCACCAACAGCTGAGGCCTAGCGCAACAGTGTACGATCTTGCCAAAAATTTCAATCTTGAAGTGTCGATGTTTGAGAGGCTTGTCAGAGTGAACTTCCCGTTTGTGCGCCTCAACTACCAGCATCGAATGAGGCCATGCATCGCTCGTCTGTTGACTCCTCATATCTATGAAACTCTGGAAAACCACCCCTCTGTGCTGAAGTATGACAATGTCAAGGGGCTTCTGAAAAATCTTTTTTTCGTGAATCATTGTGAGACAGAGGAAGAGATTAAGGATGGACGGAGCCACCAGAATCCTCACGAAGCTCATTTTGTGGTCGAGCTGTGCCGCTACTTGCTGTACCAGGACTACAAGCCTTCCCAAATTACCATTCTCACAACCTACACCGGACAGCTTCACTGTCTGCGTAAGCTCATGCCCTCTCCAGCTTTCGCTGGTGTCAAAGTCCATGTCGTTGACAAATACCAAGGGGAGGAGAATGATATCATCATATTGTCTCTGGTGCGCAGCAACCTTAAGGGCAAGGTCGGCTTCCTGAACATACCAAACCGAGTCTGTGTTGCTCTCTCTCGTGCTAAGATGGGTCTTTATTGTATTGGAAATATGGACATGCTCAGCTCGGTTAAACTGTGGAGCAACATCCTTCACACTCTAAGAGAGCACGACCAAGTAGGTAGTGCTTTGACTTTGAGCTGTCAGAACCATCCGGATAAACAGATCCAGGTGTCCCGCGGTGATGACTTCAAAGGGGCCCCTGAGGGTGGTTGTGATCAGCCCTGCCAGTTCCGCCTGGATTGTGGCCATGTGTGCACCCGTATGTGCCACCCATACGATGCCGATCACAAGAAATACAAGTGCATGAAGAACTGTCCAAAGGAGTTGTGTGAACTGGGCCACAAATGCACGAAGCGCTGTTACCAAGAGTGTGGTAAATGCCGGGTACCCCTAGACAAGATAATACCATCATGCCAGCACAATCAGAAGGTGCCTTGCCACCAAGACCCTGCAACATTTGTGTGTCAAGAGCGCTGCCAAAAGACCCTCCCATGTGGCCATCCCTGCAAGTCAACTTGCGGAGATTCCTGCACCTCTCAGTGCATGGAGAAAGTTCTGATGCAGCTGAAATGTGGACATATCCAAGAAGAACCATGCTGTATTTCCAGAGACTACAAAAGGGAGCCAAACTGCAGAACTAGCTGTGGCATCACCTTGAAATGTGGCCACCCTTGCCCAGGAACTTGCCATGGATGCTATCAAGGCCGCCTGCACAAAGGATGCACCCATAAATGCCAAGCAACCCTTGTGTGTTCTCATAAGTGTCGGGAACCCTGCGTAAGAGATTGTCCACCATGTTCCACACCTTGCGAGAACCGTTGCGTCCACAGCATCTGTAAGAAGACTTGTGGCCAGCCTTGTGCCCCTTGCATCGAACCCTGCGAATGGCAGTGCCCTCACTACAGCTGTACCAAGCTGTGTCACGAACCGTGCGACCGTCCACCTTGTTTAGTTCCCTGTAACAACAGCTTACCCTGCGGACACCGCTGCATAGGCCTGTGTGGAGACCCTTGTCCCGATAAGTGTCGTGTTTGCCACAAAGAAGAGGTCACGGAGATCTTCTTCGGCAGTGAAGACGAACCGGATGCTTGTTTTATTCAGCTAGAAGATTGCAAGCACTTGTTTGAGTCCAAAGGAATGGATCATTACATGAATCTCGACGAAGACCAAGGTGCTGAACTGGATCAAAGGGCGATCCGACTTAAGGAATGTCCAAGGTGTCGCACTCCCATCCGTAGAAACCTTCGGTATGGCACTCACATCAACCGCAGCCTGGCAGCCATTGAGATGGTCAAGGAGAAGATCAATGGTGTGCCTGATATTATCAAGAAACAGCAAGTAGTCCTAAGATCGCAACTGCGTGCACAGAAGAACTTGAAGAAGCATCTTCCCATAGAGTTTACCTCCCTTAAACAGAGGCTCAACACAAAGGACCTTTCATTCCAACAACTTTGGCATTTCGAGAACTTGATGACCTTCCTCGAGAGTATTGGGAAACTGAAAGAAATGCAGGTAGAGCATATGATGCCAGATCTTGGCAATATTCAGGGGTTCTCCCACAAAGTTGAAGAAGCTTTGAAATTCCTTTTGGATCAAAGTCAGAGGTTTTCAGACCAGCAGGTTGCAGATCTCGAACGTGAGTTGAAGAGACTCTCCTACCTGGCTGAGCTCAACGCGCGCTGCAAGATGTCTCAGTTGAGACGTCCAAGCATTGTTTTTGACACTGAGGTCCAACAATTAAGAGACATCCTGGAGGACACTTTGCCTTTCTCTGAGGGTCTTGAACGTACAGTCAAGAAAATGTTCACAGAGCTGGAAGTTAAACTGCCGCTCAGCGGCCTGGGGATCACTGACGAGGAGAGGGTGATGATACTCAAAGCCATCGGTTTGAATAAAGGACATTGGTACAAATGTCCAAACGGACATGTATATGCAATTGGTGAATGTGGGGGTGCTATGGAAAAAAGCACATGTCCAGAATGCAACGCTGATATTGGAGGTACTAACCACTCTCTCATTCAGGGAAACGTTGTGGCGTCTGAGATGGATGGTGCACAACATGCTGCCTGGTCAGATACTGCCAACTTGGCAAACTTTGACCTGATAAACTTTGAAGATTGAAATTCTTAGTTATTGTTGCCTTCTGTCTGCAGATAGGTGTTGGGCTTTAATCTGGTAACACAAATCATGAAATGCTGTTTAATCAGGTAAGCAGGTTGCACCTTTTTTCACAGCAAGTTTTAATTTAACAGTTACCAAGAGGGTTCAAAGTGAACTTTTTCTCAGCGCTTGCCAGTGTACGATGAAACTGTACTTTGCATTATTTGCTTACATTTATGTTGTAGCCATGATGAGGGGAAAAATATTTGTTGTTCGGCAACTAGTCAACCTCTTGATGAATTGCTCCTTCCACTTACTGATCCTCATATTTTCATTTTGGTGGGGGAAAAAAGGAACTTTTGGTAAAATTCTGATGGCAAATTTTCCCTAAAAGGTGCAGTGTCTAAATTTTAGGGGCATCTAGCGGTGAGGTTGCGAATTGCAACCAACAGCTCAGTCTCACTTTTGAAGCACATAGAGAAGCTACAGTGGCCAAAACAGGGCAAATATGTCATCGTCTGAGACAGCAGAGAGTACCCAGTCAAGCAAACACGATCTGTAGAGCAGTTTGTCCGCTTAGGGCTACTGTAGATACATGGCGGTGCAAAATGGCGACTTAGATGTAAGGAGACCGTCAGTGTATGTAGATAGAAATGACTGATTCTAAGTAAAAAAAAAACCCAAACAGTTCATCATGTAAATTATGAAAACATAGTTAACAGATCCTTCTAAATATTATACACTGGAACTTTAACATGATGATGCAAATCATTTGTCTCTTTGATTTGATTTGCTCATGTCAGATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_17996222_18008569.mRNA True 8532 mRNA 0.45 13 17995434 18010838

Neighbor

gene id symbol gene type direction distance location
CI01000340_17700896_17753828 CDH22 coding downstream 241606 17700825 ~ 17753828 (-)
CI01000340_17668871_17688583 NA coding downstream 306273 17668455 ~ 17689161 (-)
CI01000340_17451836_17453987 NA coding downstream 539451 17451452 ~ 17455983 (-)
CI01000340_17354694_17378496 EYA2 coding downstream 616938 17354254 ~ 17378496 (-)
CI01000340_17318768_17326504 CYP24A1 coding downstream 668890 17318100 ~ 17326544 (-)
CI01000340_18013773_18027276 DDX27 coding upstream 2693 18013531 ~ 18027276 (-)
CI01000340_18030360_18041157 ITCHB, ITCHA, ITCH coding upstream 19407 18030245 ~ 18041157 (-)
CI01000340_18091595_18104080 CBFA2T2 coding upstream 79970 18090808 ~ 18104080 (-)
CI01000340_18185156_18206837 NA coding upstream 174072 18184910 ~ 18206837 (-)
CI01000340_18228042_18229807 NA coding upstream 216337 18227175 ~ 18229807 (-)
G497081 NA non-coding downstream 31356 17963692 ~ 17964078 (-)
G497054 NA non-coding downstream 94835 17900375 ~ 17900599 (-)
G497053 NA non-coding downstream 102119 17892903 ~ 17893315 (-)
G497037 NA non-coding downstream 125350 17869865 ~ 17870084 (-)
G497025 NA non-coding downstream 160917 17810886 ~ 17834517 (-)
G497094 NA non-coding upstream 33344 18044182 ~ 18044454 (-)
G497099 NA non-coding upstream 39490 18050328 ~ 18051186 (-)
G497105 NA non-coding upstream 53287 18064125 ~ 18065085 (-)
G497044 NA non-coding upstream 151512 18162350 ~ 18166938 (-)
G497130 NA non-coding upstream 287631 18298469 ~ 18351804 (-)
G496853 NA other downstream 752695 17177492 ~ 17242739 (-)
G496845 NA other downstream 949746 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 1475460 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 1815349 16171677 ~ 16178314 (-)
G495475 NA other downstream 2382871 15606741 ~ 15612563 (-)
CI01000340_18419431_18419838 NA other upstream 408480 18419058 ~ 18421201 (-)
G497442 NA other upstream 1148031 19158869 ~ 19166778 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location