CI01000340_18013773_18027276 (DDX27)


Basic Information

Item Value
gene id CI01000340_18013773_18027276
gene name DDX27
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 18013531 ~ 18027276 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_18013773_18027276.mRNA
ACGGTCGGTAAGAGCAGTAAGATGTTGCAGCACATCGACTTTCGGATGCGCTGCATCCTGCAGGACGGGCGAATCTTCATCGGCACATTCAAAGCGTTCGACAAACACATGAACCTGATCCTGTGCGACTGTGACGAGTTCAGAAAGATCAAACCCAAGAACTCCAAGCAGCCGGAGCGAGAGGAGAAGAGGGTGTTGGGTCTGGTTTTGCTCCGAGGAGAGAATCTAGTTTCTATGACAGTAGAAGGACCCCCTCCTAAAGACACTGGCATCGCCCGCGTGCCGCTGGCTGGAGTGGCTGGAGGTCCAGGTGTCGGCAGGGCTGCAGGTCGAGGCGTTCCCGCTGGAGCACCGATGGCACAGGCTCCCGCTGGACTCGCGGGACCCGTTAGGGGAGTCGGTGGCCCGTCGCAGCAGGTCATGACCCCTCAGGGCAGAGGTACGGTCGCGGCAGCCGCTGCGGGAGCCAGTATAGCCGGAGCCCCCACACAGTACCCTCCGGGTCGGGCCGGTCCACCTCCACCGATGGGCAGAGGAGCGCCACCTCCAGGTATGATGGGACCTCCTCCAGGCATGCGGCCGCCCATGGGACCACCGATGGGAATGCCGCCCGGCCGCGGCGCTCCGATGGGAATGCCTCCCCCTGGCATGAGGCCGCCACCCCCTGGAATGAGAGGTCCTCCTCCTCCAGGCATGCGTCCTCCCAGACCCACAAAGATGTTTTCAGATATGGATCTGATCAGAACTATTGGTGAGGATGATGAAGTGCCAGAGGAACCGGATTCAGCGTCTGATGATGAAGCCGATCAGCCCATCGTGTTGAGTAAAGAGAAGCGTGCTCTGAAGAGCCGCGGCACTGGAGACTTCAGCGCTGATTTTGAGTTTGGAGAGCGAGACGGAGTGTACAGTGGTGACTGGGCGATGGACGACGTGATGGCGCAGCTGAAGAAGAGGAAAGCGCCCACGACCCTGGACGAAAAGATTGAGAAAGTGCGGAAAAAGCGCAAAATTGAGCCTGAGGCATTTTTTGAAGATGCTTCCCAGTATGATGAGAGTCTCACCTTCCAGGATATGAATCTGTCTAGACCTTTACTGAAGGCCATCACTACTATGGGTTTTAAGCAGCCCACTCCTATTCAGAAAGCCTGCGTCCCTGTGGGGCTTCTGGGAAAAGACATCTGTGCATGTGCCGCCACTGGCACTGGTAAGACGGCGGCCTTCATGTTGCCGGTCCTGGAGCGTCTGATCTACAAGCCGAGAGAGACGCAGGTGACGCGTGTGCTGGTTCTGGTGCCGACCAGAGAGCTGGGCATCCAGGTGCACACCGTGGCTCGTGAGCTGGCGCAGTTCACCAGCATCAGCACGTGCCTGGCAGTCGGTGGGCTGGACCTGAAGTCTCAGGAGGCGGCGCTGAGGGCGGGGCCAGACGTCCTGATCGCCACACCGGGACGACTGATCGATCACTTGCACAACACGCCGTCGTTTGAACTCAGTCAGATCGAGATCCTCATCTTAGACGAGGCCGACAGGATGTTGGACGAGTACTTTGAGGAGCAGATGAAGGAGATCATCAGGATGTGCTCATATCAGAGACAGACCATGCTGTTCTCGGCCACCATGAGTGAGGAGGTGAAGGATTTGGCGTCGGTGTCGCTCAAGCAGCCGGTGAGGATCTTTGTGAACAGTAATACAGATGTGGCTCCGTATCTCAGACAGGAGTTTGTGAGGATCAGACCCAACAAAGAAGGAGACAGAGAGGCGATTGTTGCAGCTCTCCTCACCAGAACGTTCCAGGATCACGTGATGCTCTTCACTCAGACTAAGAAGCAGGCTCATCGCATGCACATTCTGCTGGGTTTGATGGGGTTAAAGGTCGGCGAGCTTCACGGAAACCTGTCGCAGACGCAGAGATTGGAGAGTCTGAGGCGTTTTAAGGATGAACAGATTGATATTTTGGTGGCCACAGATGTGGCTGCCAGAGGTCTGGATATAGAGGGAGTGAAAACTGTGATAAACTTCACCATGCCCAACACAGTGAAGCATTACGTGCACAGGGTCGGCCGAACGGCTCGCGCGGGGAAAGTGGGCCGCTCCGTGTCTCTCGTGGGCGAGACTGAGAGGAAGATGCTGAAAGAGATTGTTAAAAAAGCCAAAACGCCCGTCAAAGCTCGCGTCATTCCTCAAGAGGTCATTCTGAAGTTTCGGGATCTGATTGAGAAGTTGGAGAAGGACGTGTACGCCGTGTTACGCTTGGAGAGGGAGGAAAAGGAAATGACCCGCTCAGAAGCGCAGATCAGTTCAGCTCAGAAGAAGTTAACACAGAGCGCAGAAGAGAAACCTGTGCCCAGGACGTGGTTCCAGACACACCAGGAGAGAAAGAAAGATCGCATGACGAAGGCGCTACAGGATTATGATTTGGCTCTGAGAGGAAAGAAAAAACGTGCACAGTTCCTGAAAGAGGGCAAGAGAAAAGAGTTAACGGCTGAGGAGAGAGCTCAGTTCGAGGTGCTGAAGTCTCAGATGTACGCCGAACGAGCAGCTAAACGCGATCGCAAGCAGAAGAGAGCCAGAGCCATTCCAGAAGACAAACCCGTTCAGAAAGCTCCAAAAGAAAACAAATCTAGGAAGAAGACAGTGTTTGACAAGGAGCTCACGAACACCAGCAAGAAAACCCTGAAGCAGTACAGAGCCGGGCCGTCCTTCGAGGACAGGAAGAGACTCGGCCTTCCAAACAAGAAGGGAGGACACTTCAAGTCAAAGGCCAAGTGAGATTTATTATTACCCTAAAACACATTCAGATTAGACATGATATATGTGCTCATTTTTCATGCATCCGGAAACTAAAAAATATGCGGTTTTAGTGTTTCATTTAACAGTAGATTGTTAATAGCAACAGACTGATATTTAACTTTTCTTTTACATAAAAAAACAAAAAAACAAAAAAAAACAGGTTGGTTGGAAATTATGGAGGGATTGACATGATTAAATACTTCATGGAATATTGCAATAAA

Function

symbol description
ddx27 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Acts upstream of or within rRNA processing. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; brain; digestive system; musculature system; and retina. Orthologous to human DDX27 (DEAD-box helicase 27).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13181 DDX27, DRS1; ATP-dependent RNA helicase DDX27

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_18013773_18027276.mRNA True 3011 mRNA 0.53 24 18013531 18027276

Neighbor

gene id symbol gene type direction distance location
CI01000340_17996222_18008569 NA coding downstream 2693 17995434 ~ 18010838 (-)
CI01000340_17700896_17753828 CDH22 coding downstream 259703 17700825 ~ 17753828 (-)
CI01000340_17668871_17688583 NA coding downstream 324370 17668455 ~ 17689161 (-)
CI01000340_17451836_17453987 NA coding downstream 557548 17451452 ~ 17455983 (-)
CI01000340_17354694_17378496 EYA2 coding downstream 635035 17354254 ~ 17378496 (-)
CI01000340_18030360_18041157 ITCHB, ITCHA, ITCH coding upstream 2969 18030245 ~ 18041157 (-)
CI01000340_18091595_18104080 CBFA2T2 coding upstream 63532 18090808 ~ 18104080 (-)
CI01000340_18185156_18206837 NA coding upstream 157634 18184910 ~ 18206837 (-)
CI01000340_18228042_18229807 NA coding upstream 199899 18227175 ~ 18229807 (-)
CI01000340_18302048_18303998 NA coding upstream 274112 18301388 ~ 18304048 (-)
G497092 NA non-coding downstream 6516 18006655 ~ 18007015 (-)
G497081 NA non-coding downstream 49453 17963692 ~ 17964078 (-)
G497054 NA non-coding downstream 112932 17900375 ~ 17900599 (-)
G497053 NA non-coding downstream 120216 17892903 ~ 17893315 (-)
G497037 NA non-coding downstream 143447 17869865 ~ 17870084 (-)
G497094 NA non-coding upstream 16906 18044182 ~ 18044454 (-)
G497099 NA non-coding upstream 23052 18050328 ~ 18051186 (-)
G497105 NA non-coding upstream 36849 18064125 ~ 18065085 (-)
G497044 NA non-coding upstream 135074 18162350 ~ 18166938 (-)
G497130 NA non-coding upstream 271193 18298469 ~ 18351804 (-)
G496853 NA other downstream 770792 17177492 ~ 17242739 (-)
G496845 NA other downstream 967843 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 1493557 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 1833446 16171677 ~ 16178314 (-)
G495475 NA other downstream 2400968 15606741 ~ 15612563 (-)
CI01000340_18419431_18419838 NA other upstream 392042 18419058 ~ 18421201 (-)
G497442 NA other upstream 1131593 19158869 ~ 19166778 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033253 ddx27 coding NC_007117.7 CM002890.2 57436314 ~ 57476465 (-)
bowfin (Amia calva) AMCG00008235 snrpb,LOC108272150,LOC108250717 coding CM030123.1 CM030123.1 47632330 ~ 47639937 (-)