G499686


Basic Information

Item Value
gene id G499686
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000344
NCBI id null
chromosome length 3248351
location 1169109 ~ 1172991 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU573190
TACCCTCAACACTGCTTGTGAACAAGAATTCAGCAGTTGCCCCTTTAGATCTCTAGCTTCTGTATGCGTGTGATCTAACCGTGGAGCATTGGTGATCACAAGGTCTCCCTGTTTCCCGATTTCAAGCGACCCATGCATATGTGAACGGTTGAGAGCGTAGGCTGCGTTTATAGTGCTTGCAGCCAAAGCTTCTGGCATAGACATCTTCATCATTACACAGGCCAAGTGCATCACCATAGGCATTGAGCAGCAGTAGGCATTGGGGTTGAAGTCACTGCCCAGGGCCACTATGACTCCAGCATCAAGCATATCTCTCGCACGTGGTGGAGAAAGCCTTAATATATAGGCAGTGGTGGGTAGGAGGACAGCTGATGTTTTAGCTGTTGCTATGGCAGCGATTCCATCATCTGTCACTTCTTCTAAATGGCTGATGGCTAAAGCGCCAAGTTCTGCCCCGAGATGTGCCGAGTTCATGGGATGGAGTTCATCGCCATGAAAATTGATGTTGAGGCCCATGTCTTTGCCAGCCTGGAGTATGCAACGTGTAGAGTTCAGATCGAACACACCTTTCTCACAAAATACATCAATGTTGTCCACCTGCAGATCACCGGAAGCAGTTAGCTTTTTTATCTTGGGCAACTGCACTGCCACAATGTCCTGAGTGGCTTCTTCCATAGTTTTTCCTTTGGGTACTGCGTGGGCTCCACAGTATGTTGCTGATATCCCGATTGGCAGTGACTTTCTCGCTGAATTGATAACCCTCAGCATCTTGAGTTCAGTGTCCAACTCAAGTCCATATCCGCTCTTACACTCCACCAGCGTGGTTCCTGCTCTCATCATGCGCTCCAGACGGCTCTTTAACCCATCTAATAGATGTTGTTCGGTTGCTGAGCGAGTGTGTGCCACTGTGAAATGAATTCCACCTCCTGCTTCATGCACTTCCATGTATGTGGCACCAGCCAGCTTCATGGCAAACTCATGCACTCTGTCTCCAGCCCACACTGGATGTGTGTGTGCATCTACCAGACCAGGGAGAACACACATGCCGGAAGCATCCAGAACACTGTCAAACTTTGCTCCTTTGAACTGAGACTCAATGATGTCTGCCGATCCAACAGCTTTAATAAGTCCATCATGTCCAATCACCACACTGCCATTCTCAACGACAGCCAGAGTCTGCATCCCATTCCTGGTGAGATACTTTTCACCATTTCTACAAACTAAGACCACTTGTGTTGCATTCTTGACCAAAAGTCTAAAACTGTTTGCAGACATTGTTAGTATAACTTTGCTGTTAGTGTTTTAGAGAAGAGCTTAGGGATGAAAGAGTAGGTAAATATTTAGCAAAGCAAAAATTAGATAACATGGCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU573190 True 1371 TUCP 0.47 8 1169109 1172991

Neighbor

gene id symbol gene type direction distance location
CI01000344_01148037_01163418 NTN4 coding downstream 5691 1147735 ~ 1163418 (-)
CI01000344_01024079_01086671 NA coding downstream 82438 1023396 ~ 1086671 (-)
CI01000344_00982486_01019957 KIRREL, KIRRELA coding downstream 149075 982228 ~ 1020149 (-)
CI01000344_00960146_00977733 NDUFS2, NDUFS2.L coding downstream 189657 960027 ~ 979452 (-)
CI01000344_00954563_00959583 NA coding downstream 209261 953725 ~ 959848 (-)
CI01000344_01178860_01181710 NA coding upstream 5869 1178860 ~ 1182338 (-)
CI01000344_01224910_01235323 MAN2B2 coding upstream 51573 1224564 ~ 1235323 (-)
CI01000344_01243421_01244832 CCNB1IP1 coding upstream 70184 1243175 ~ 1244872 (-)
CI01000344_01274460_01279238 OXA1L coding upstream 101469 1274460 ~ 1279516 (-)
CI01000344_01296456_01300324 NA coding upstream 123264 1296255 ~ 1301038 (-)
G499779 NA non-coding downstream 666 1167189 ~ 1168443 (-)
G499683 NA non-coding downstream 123049 1044130 ~ 1046060 (-)
G499765 NA non-coding downstream 129985 1038899 ~ 1039124 (-)
G499701 NA non-coding upstream 34133 1207124 ~ 1208007 (-)
G499666 NA non-coding upstream 36876 1209867 ~ 1210455 (-)
G499782 NA non-coding upstream 44014 1217005 ~ 1217275 (-)
G499693 NA non-coding upstream 81049 1254040 ~ 1256129 (-)
G499784 NA non-coding upstream 114160 1287151 ~ 1287765 (-)
CI01000344_00648763_00666641 DTX1 other downstream 500963 648763 ~ 666648 (-)
G499520 NA other downstream 829244 337073 ~ 339865 (-)
G499691 NA other upstream 62790 1235781 ~ 1240682 (-)
G499804 NA other upstream 241025 1414016 ~ 1419068 (-)
G499807 NA other upstream 249360 1422351 ~ 1423174 (-)
CI01000344_01794474_01807109 NTN5 other upstream 633669 1793652 ~ 1807701 (-)
G499994 NA other upstream 945380 2118371 ~ 2120477 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location