Gene
RNA
| Item | Value |
|---|---|
| gene id | G499666 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000344 |
| NCBI id | null |
| chromosome length | 3248351 |
| location | 1209867 ~ 1210455 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU573165 | False | 487 | lncRNA | 0.47 | 2 | 1209867 | 1210455 |
| TU573167 | True | 505 | lncRNA | 0.47 | 2 | 1209867 | 1210455 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000344_01178860_01181710 | NA | coding | downstream | 27529 | 1178860 ~ 1182338 (-) |
| CI01000344_01148037_01163418 | NTN4 | coding | downstream | 46449 | 1147735 ~ 1163418 (-) |
| CI01000344_01024079_01086671 | NA | coding | downstream | 123196 | 1023396 ~ 1086671 (-) |
| CI01000344_00982486_01019957 | KIRREL, KIRRELA | coding | downstream | 189833 | 982228 ~ 1020149 (-) |
| CI01000344_00960146_00977733 | NDUFS2, NDUFS2.L | coding | downstream | 230415 | 960027 ~ 979452 (-) |
| CI01000344_01224910_01235323 | MAN2B2 | coding | upstream | 14109 | 1224564 ~ 1235323 (-) |
| CI01000344_01243421_01244832 | CCNB1IP1 | coding | upstream | 32720 | 1243175 ~ 1244872 (-) |
| CI01000344_01274460_01279238 | OXA1L | coding | upstream | 64005 | 1274460 ~ 1279516 (-) |
| CI01000344_01296456_01300324 | NA | coding | upstream | 85800 | 1296255 ~ 1301038 (-) |
| CI01000344_01304721_01306012 | NA | coding | upstream | 94134 | 1304589 ~ 1306012 (-) |
| G499701 | NA | non-coding | downstream | 1860 | 1207124 ~ 1208007 (-) |
| G499779 | NA | non-coding | downstream | 41424 | 1167189 ~ 1168443 (-) |
| G499683 | NA | non-coding | downstream | 163807 | 1044130 ~ 1046060 (-) |
| G499765 | NA | non-coding | downstream | 170743 | 1038899 ~ 1039124 (-) |
| G499782 | NA | non-coding | upstream | 6550 | 1217005 ~ 1217275 (-) |
| G499693 | NA | non-coding | upstream | 43585 | 1254040 ~ 1256129 (-) |
| G499784 | NA | non-coding | upstream | 76696 | 1287151 ~ 1287765 (-) |
| G499785 | NA | non-coding | upstream | 77765 | 1288220 ~ 1288479 (-) |
| G499690 | NA | non-coding | upstream | 123330 | 1333785 ~ 1338281 (-) |
| G499686 | NA | other | downstream | 36876 | 1169109 ~ 1172991 (-) |
| CI01000344_00954563_00959583 | NA | other | downstream | 250175 | 953725 ~ 959848 (-) |
| CI01000344_00648763_00666641 | DTX1 | other | downstream | 541721 | 648763 ~ 666648 (-) |
| G499520 | NA | other | downstream | 870002 | 337073 ~ 339865 (-) |
| G499691 | NA | other | upstream | 25326 | 1235781 ~ 1240682 (-) |
| G499804 | NA | other | upstream | 203561 | 1414016 ~ 1419068 (-) |
| G499807 | NA | other | upstream | 211896 | 1422351 ~ 1423174 (-) |
| CI01000344_01794474_01807109 | NTN5 | other | upstream | 596205 | 1793652 ~ 1807701 (-) |
| G499994 | NA | other | upstream | 907916 | 2118371 ~ 2120477 (-) |
