G510639


Basic Information

Item Value
gene id G510639
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000352
NCBI id null
chromosome length 2255705
location 298867 ~ 299558 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU585487
AGGAATCGTTGAGAGTAACAGATTTTTTGTGCATGCTTGATTTGGTTGTTCTAAAGGTGTGTAAAAAAAAAAAAAAAAAATCACCGATTTAGTCCCTCCGGGTCAGACTTTTTTTCCATTTCATTTGTCCAAAAAAAAAAAAAAAAATCCAGAATAAATCTGAAATGTTCTACATTTAAATAAAGGTCTGGTCCTAGACCATAAACACAAAGTCGAACGAACTTTCTATCTCATACACACACATATACACACACAAAAACACACACATGTGTGACTGCAACAGAGAGCATTTTTATAGAAATTGGCAAATAAAATCAACAAAACTGGCCTAAATCTGAAAAATTTTACATGTAAATAAAGGTCTGGTCCTTGACCATAAACACAAAGTGGAACGAACGTTCTATCTCATACACACACACATACACACACATAAACACAAACACACACACACACACACACACACACACACACACACAGACACATACACAGAGACACACACATATGTGTGACTGCAACAGAGGGCATTTCTGTAGAAAATGGCAAATAAAATCAACAAAACTGGCATAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU585487 True 569 lncRNA 0.35 2 298867 299558

Neighbor

gene id symbol gene type direction distance location
CI01000352_00287910_00289361 NA coding downstream 9056 287189 ~ 289811 (-)
CI01000352_00277691_00278227 NA coding downstream 20632 277618 ~ 278235 (-)
CI01000352_00271117_00271978 NA coding downstream 26823 270877 ~ 272044 (-)
CI01000352_00248375_00249388 NA coding downstream 46758 248053 ~ 252109 (-)
CI01000352_00233543_00234955 NA coding downstream 63572 232777 ~ 235295 (-)
CI01000352_00374035_00374510 NA coding upstream 74039 373597 ~ 375177 (-)
CI01000352_00385785_00387033 NA coding upstream 86188 385746 ~ 387033 (-)
CI01000352_00402976_00419805 NA coding upstream 102960 402518 ~ 420593 (-)
CI01000352_00447631_00450928 NA coding upstream 148034 447592 ~ 451074 (-)
CI01000352_00472719_00476864 NA coding upstream 173042 472600 ~ 478075 (-)
CI01000352_00186554_00189415 NA non-coding downstream 109280 186474 ~ 191221 (-)
G510578 NA non-coding downstream 113378 185255 ~ 185489 (-)
CI01000352_00155260_00164016 NA non-coding downstream 139327 154439 ~ 164747 (-)
G510167 NA non-coding downstream 279531 18780 ~ 19336 (-)
G510643 NA non-coding upstream 299467 599025 ~ 602879 (-)
G510775 NA non-coding upstream 346932 646490 ~ 688850 (-)
G510774 NA non-coding upstream 434348 733906 ~ 737707 (-)
G510841 NA non-coding upstream 493135 792693 ~ 792971 (-)
G510844 NA non-coding upstream 495432 794990 ~ 795237 (-)
CI01000352_00081761_00086027 NA other downstream 208209 80953 ~ 86080 (-)
G510953 NA other upstream 669875 972660 ~ 997817 (-)
G511618 NA other upstream 1775975 2075533 ~ 2085310 (-)

Expression


Co-expression Network