RNA id: TU585487


Basic Information

Item Value
RNA id TU585487
length 569
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G510639
representative True

Chromosome Information

Item Value
chromosome id CI01000352
NCBI id null
chromosome length 2255705
location 298867 ~ 299558 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAATCGTTGAGAGTAACAGATTTTTTGTGCATGCTTGATTTGGTTGTTCTAAAGGTGTGTAAAAAAAAAAAAAAAAAATCACCGATTTAGTCCCTCCGGGTCAGACTTTTTTTCCATTTCATTTGTCCAAAAAAAAAAAAAAAAATCCAGAATAAATCTGAAATGTTCTACATTTAAATAAAGGTCTGGTCCTAGACCATAAACACAAAGTCGAACGAACTTTCTATCTCATACACACACATATACACACACAAAAACACACACATGTGTGACTGCAACAGAGAGCATTTTTATAGAAATTGGCAAATAAAATCAACAAAACTGGCCTAAATCTGAAAAATTTTACATGTAAATAAAGGTCTGGTCCTTGACCATAAACACAAAGTGGAACGAACGTTCTATCTCATACACACACACATACACACACATAAACACAAACACACACACACACACACACACACACACACACACACAGACACATACACAGAGACACACACATATGTGTGACTGCAACAGAGGGCATTTCTGTAGAAAATGGCAAATAAAATCAACAAAACTGGCATAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585427 lncRNA downstream 109280 189314 ~ 189587 (-) True CI01000352_00186554_00189415
TU585425 lncRNA downstream 111437 187152 ~ 187430 (-) False CI01000352_00186554_00189415
TU585424 lncRNA downstream 112042 186555 ~ 186825 (-) False CI01000352_00186554_00189415
TU585423 lncRNA downstream 113378 185255 ~ 185489 (-) True G510578
TU585387 lncRNA downstream 139327 152853 ~ 154271 (-) True G510542
TU585496 lncRNA upstream 299467 599025 ~ 602879 (-) False G510643
TU585497 lncRNA upstream 299467 599025 ~ 602879 (-) True G510643
TU585637 lncRNA upstream 346932 646490 ~ 649239 (-) False G510775
TU585638 lncRNA upstream 346932 646490 ~ 688850 (-) True G510775
TU585636 lncRNA upstream 434348 733906 ~ 737707 (-) True G510774
CI01000352_00287910_00289361.mRNA mRNA downstream 9056 287189 ~ 289811 (-) True CI01000352_00287910_00289361
CI01000352_00277691_00278227.mRNA mRNA downstream 20632 277618 ~ 278235 (-) True CI01000352_00277691_00278227
CI01000352_00271117_00271978.mRNA mRNA downstream 26823 270877 ~ 272044 (-) True CI01000352_00271117_00271978
CI01000352_00248375_00249388.mRNA mRNA downstream 46758 248053 ~ 252109 (-) True CI01000352_00248375_00249388
CI01000352_00233543_00234955.mRNA mRNA downstream 63572 232777 ~ 235295 (-) True CI01000352_00233543_00234955
CI01000352_00374035_00374510.mRNA mRNA upstream 74039 373597 ~ 375177 (-) True CI01000352_00374035_00374510
CI01000352_00385785_00387033.mRNA mRNA upstream 86188 385746 ~ 387033 (-) True CI01000352_00385785_00387033
CI01000352_00402976_00419805.mRNA mRNA upstream 102960 402518 ~ 420593 (-) True CI01000352_00402976_00419805
CI01000352_00447631_00450928.mRNA mRNA upstream 148034 447592 ~ 451074 (-) True CI01000352_00447631_00450928
CI01000352_00472719_00476864.mRNA mRNA upstream 173042 472600 ~ 478075 (-) True CI01000352_00472719_00476864
TU585394 other downstream 208209 87140 ~ 90658 (-) True G510549
TU585859 other upstream 669875 972660 ~ 997817 (-) True G510953
TU586627 other upstream 1775975 2075533 ~ 2085310 (-) True G511618

Expression Profile