RNA id: CI01000352_00402976_00419805.mRNA


Basic Information

Item Value
RNA id CI01000352_00402976_00419805.mRNA
length 3598
RNA type mRNA
GC content 0.41
exon number 6
gene id CI01000352_00402976_00419805
representative True

Chromosome Information

Item Value
chromosome id CI01000352
NCBI id null
chromosome length 2255705
location 402518 ~ 420593 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATGCTGATTCTTGATGCACGGCCTCTCCGGTGTTAGGTAACTTGCTGTTAGCACCTCCTGCAGACAAATGCTTGTAACCTAAGTGTTGACTGTATTTTATTTTACTTTATTTTTACTTTATTATTTTATTTAGTGTATTGTATGCAAACTACTTAACCTGTAATTAATAAAACTATATTACTTATAATTAAGAAGCTTGCCTGCCAAAAAAGTCTCTGATTTCTAAACTGAGCTGAACAGACCACGGAGAAGTCTTCTGAGACCTATTTTGTAAGTATGAGATCTCAACTACTTATAGATTAGGACAGATTCGACTTGCTTTACCTAACCTGAGAATAATTAAAATAAGGTAGAAGGTGTAAAAAAAATTTTGCACCATAAAACAACACCAAAGGGAACTGAGACTCAGCATATCGCATCTACTCTAATATTAAGAGGAGCAACGTTCACCTTGGCTGAAAAGTGCGAGGCCACAAACTCGCCTTGCAAAAGGGAAGTTGGAAGGGACTGCTACTCGCATTTATTGCCCAATGCAGAAGACGGGCCCTGGCCGAAGACAACTCTAAACATAGAGGAGGCATACAAGGACCACCAGCCGCAGAATCAGAGGCGGAGAGGCCTTTTCTAGCAGAAAAAGGCCTACTCTAACTACTGCAAGCCAGGAGGCGGAAAGTGTGTTCCTGAATACACCTAGGCTGGAAATAAGGGTGGCCCATTGGTGAGGCTGACACACCTAACATGACTTTGAAGAGGTAAAAAGAACAAAAACCCAACCTATCGAGTCTTATGGCAAGAGGAGGCAGGTATGTTCGAACAGCCGCGAGTCCTAAAGCACCAGATACAGCTAATATTAGCAATAGCAGCGTCTCATACTCAGAGCATCAAAGCAGTCCTCAACACAACTCCATGGAAGAAAATGAAGGGGTTATGGTGGAGAATGAAATTGAGCAGCAGATTAATGAATGTTTACCACCTGAACCTGAGAAAGAAAAAGAAGAAGCAACCACACAAGAGCAAGTTCAAATATCAGGTGCAACATTAATAGAACAGTTAATCGAGCGAGTCACTAAGTTGGAGACTCGTTTTGAAGAGTGTGTTCAACAGATGCAGGAGAGTGTGACCTTTGCTGAGTGTAAAGCTGTTGAAGAAAGAGTGACTTACCACCTGGAACGAGAATGTGTTAACCAGACTTACCATGTGCCAAGCAGCCAAATGTCCTGCTTAGAAGGTGTGTCAATGATGTCATTCCATCCGCCAGTGAAAATAGAATTTCCAAGTTTTAGCAATAGCGAAGAGGAAGATCCTGTTACTTTCATAGAAAGATGTGAAGAATACGTTGCCATTCGGCCTCTCAATGATTGTGAAATTCTTGCTTCTTTGACATCAGTATTAAAGGGTACTGCAAAAGATTGGTGGCTGGCAGAAAAAAAGAACGTTCAGACATGGCAACGGTTCAAAGAGATATTTTTGCGTTCATTCTTAAGTGAAGACTATGAAGAAGAAGCTGCTAGAAGATTATTGGAAAGGAAGCAGGGTACCAAAGAGAGTATTAGAGATTTTGCTTATCATTATAGAGCCTTATGCCTTCGAAGAAACAAGGACATGATTTTGAAGAATCTAGAAGATACTATAGCCAAGTTAATTCAGAGACACAACAATGGAGAGCGAATGTTTCTAGAGAAGTTGTACCTAGGCAACGTATTCTTCTACCTAGGCAACTTATTCTTCTTCCTAGGCAACGTATTCTTCACATCTTTCTATGAAAGTAACAGGATCTTCCTCTTCGCTATTGCTAAAACTTGGAAATTCAAGTCTCCAGCTAACACTAGAACCATGCAGTCTATGAAAAGTGTTGTTCAACCTGAAATTATCAGCCTCCCTATCATTCTACGTGGCAGATTCTTCCAACCAATGATTGATATTGGCAGTACCTTATCGCTCATTCAAGAATCTTGTTGGAAGCAATTGCAATGTCAAGAACCATGTAAACCGAGTAATGGTCAGTCCTTCTTGCTAGCCAACGGTCAGAAACAGGATGCCATTGGCAAGCTGGAGTGGGAATGTGAACTGCAAGGGAGGAAAATAGATCTTACATTGTATGTAATGCGTGATTCTGACTTAACAGTACCCATTATCCTTGGTATGGATTTACTGTTATCTTCAGAGATAGTCCTTGACTTCAGAAGATCTCAATATCAACTGCCAGCATTAGAAGCAAGCACTACTTCTGGATTTCAAAATGTGACCAATTCTACAGTGCAGACAGAGATTTTCTCAGGCTTTAAGATCTTCATAATATGCATTTACATTGCCATCCCTATTGCAAGTCTCATTGGAAATGGGCTTGTCATATTTGTGACTGGTTACAAAATGAAGACGACAGTCAACTCCATTTGGTTCCTCAACTTGGCGATTGCAGACTTCATCTCCTCCTTAACTCTAATCATAAGCGCCATTGTAGAGACAAGCAAAATCTGGCACTTTGGTAACTTGAAGTGTACGTTTCTCTGTTTTGTGATTTACATAAACTCATTTACTAGCATTTTGCTACTGACGACTATTAGTCTGGACCGATGCCTGTGCACATGGATGATCGTGTGGTCTCGTAATAATCGAACCATATTCAAAGCCAGAATCATCTGCATGATTGTGTGGGTTTTATCCATCAGCGGCTGCATCCCTGCCATCCGCAATCACTCAACAGCAGAGAGTGAAGGAACCTCTAACCATCCTAAACAATACTACAAGTTTCTGGTCACATACAGGTTCATAGTGGGCTTTGTCATCCCCTTCCTGATCATTGCATCTTCATATATAGCTATCTGCGTGCGAGTCAAACGCCTCAAAAAGAAGAAGCAGCCCAGGTCTTACCGGGTCATTATAGCTGTGGTCCTGGCCTTTTTCGTATGCTGGCTTCCTTTTCATGTCCACAAATTTTATTACATAAGTGCAAAAGAGAATCAGGGGAGTGAGCCTGCTAAAGAGATTTCTGAAGCTGTAGTTACCTGCCTGGGTTTTCTAAACAGCTGTCTGAACCCCATTCTCTATGTGTTCATGTGTAAGGAGTTTAAGATGAAGCTGAAACAGTCTCTGCTGCTGGTGCTGGAGACGGCGTTTGCTGAAGATCATCTGGTCTGAAAGCAAACAAAAGATACGACCATCTCTATTCCTACCAGTTGCCAGGATGGATGGCCACCCTTTTATGACATGCCCACATGAGGTTCAACAGCCATACACTGCATTATACAAATGAAAATGTTGAATCACCGACTCAATTTACTCTATAGCAATGTATTGGGGGAAAAAAGTGTTTATTAAATGGACTAATCTGGCTAAATCTTGTTGGCTATTTTAATGCGACATGACATGCATAGATAAGAAAAAAAGAATTTTCAGCATAAAAATGCTTGTTTTTTTCAGTGGTGGATGTTAACAAAGTAGTTTAACTCCCTTACTGTAGCCTACTTTTAGTAGGCTATCTGTACTTTTTCAGAGTATTTTTATTTTGTAAAAATTTTACGTTTACTTCACTACATTCCAGTAATGTAGCCATGAGGGGGCCTGGGGGGATTGAGGTTCTGATCACTTAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585487 lncRNA downstream 102960 298867 ~ 299558 (-) True G510639
TU585427 lncRNA downstream 212931 189314 ~ 189587 (-) True CI01000352_00186554_00189415
TU585425 lncRNA downstream 215088 187152 ~ 187430 (-) False CI01000352_00186554_00189415
TU585424 lncRNA downstream 215693 186555 ~ 186825 (-) False CI01000352_00186554_00189415
TU585423 lncRNA downstream 217029 185255 ~ 185489 (-) True G510578
TU585496 lncRNA upstream 178432 599025 ~ 602879 (-) False G510643
TU585497 lncRNA upstream 178432 599025 ~ 602879 (-) True G510643
TU585637 lncRNA upstream 225897 646490 ~ 649239 (-) False G510775
TU585638 lncRNA upstream 225897 646490 ~ 688850 (-) True G510775
TU585636 lncRNA upstream 313313 733906 ~ 737707 (-) True G510774
CI01000352_00385785_00387033.mRNA mRNA downstream 15485 385746 ~ 387033 (-) True CI01000352_00385785_00387033
CI01000352_00374035_00374510.mRNA mRNA downstream 27341 373597 ~ 375177 (-) True CI01000352_00374035_00374510
CI01000352_00287910_00289361.mRNA mRNA downstream 112707 287189 ~ 289811 (-) True CI01000352_00287910_00289361
CI01000352_00277691_00278227.mRNA mRNA downstream 124283 277618 ~ 278235 (-) True CI01000352_00277691_00278227
CI01000352_00271117_00271978.mRNA mRNA downstream 130474 270877 ~ 272044 (-) True CI01000352_00271117_00271978
CI01000352_00447631_00450928.mRNA mRNA upstream 26999 447592 ~ 451074 (-) True CI01000352_00447631_00450928
CI01000352_00472719_00476864.mRNA mRNA upstream 52007 472600 ~ 478075 (-) True CI01000352_00472719_00476864
CI01000352_00478813_00480433.mRNA mRNA upstream 57527 478120 ~ 482684 (-) True CI01000352_00478813_00480433
CI01000352_00549005_00551748.mRNA mRNA upstream 128386 548979 ~ 551774 (-) True CI01000352_00549005_00551748
CI01000352_00553364_00555334.mRNA mRNA upstream 132611 553204 ~ 555364 (-) True CI01000352_00553364_00555334
TU585394 other downstream 311860 87140 ~ 90658 (-) True G510549
TU585859 other upstream 548840 972660 ~ 997817 (-) True G510953
TU586627 other upstream 1654940 2075533 ~ 2085310 (-) True G511618

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018542 True 1949 mRNA 0.42 2 NC_007126.7 37795286 ~ 37799496 (-)