RNA id: CI01000352_00553364_00555334.mRNA


Basic Information

Item Value
RNA id CI01000352_00553364_00555334.mRNA
length 766
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000352_00553364_00555334
representative True

Chromosome Information

Item Value
chromosome id CI01000352
NCBI id null
chromosome length 2255705
location 553204 ~ 555364 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAAGACATTAGGCACTTGTCTCTACAACATGATCGGGATTGTCAGCTTTTTTGCTTTGGTGGCCTCCACTCTGGGGCTAAAGTTCACAATGTTGTCCTTGGACAGAATGACCGTGGCTCCTCAACTGAACCTATTCAGTTCAGGGGAATTGCCAAGTCCAGTACAGATGACGCCCCGTGTCTCTCCTATATGTCTGCCTAGCTCCTCTGATAAAACCCTCCCTGGGACTGTTTGTGTGACCACTGGCTGGGGCAGAACTGCAATCACCTGGAATCCTCGCATCCTGCAGGAGGCTAACAAGCCGATAGTGAGTCAGACTCAGTGTAAGCAAGTATTTGGTCAGACAAAAATCACTGATGCCATGATCTGTGCTGGAGCCTCTGGATCCTCGTCTTGCCAGGGTGATTCTGGTGGTCCTCTGGTGTGTCAGACCTCAGGTGTTTGGTATCAGTCTATACCCGCGTCTCTTACTTTCGAAAATGGATTGACGAAACTGTTCAATTCAACTAGACTTACCCTGCAGAGGACACATAAGAAGTCTGTCATCGCTACCCTTTTTATCCCTTTTTATTCACAGTTTCTCCTATGTCTGAAAGATTTCTAGTGATTAAACTTTATCTTCATACACTTTTTGTGATGCTACTGTTTTGAATTCTGGAAATACTTTGACATAATGATAATTAAATTATTAAAAGTATAACTTATGTACCTGAAATGTATCTGTTTTAATGTAATTTTAATGGACATACCTGTTTCTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585487 lncRNA downstream 253646 298867 ~ 299558 (-) True G510639
TU585427 lncRNA downstream 363617 189314 ~ 189587 (-) True CI01000352_00186554_00189415
TU585425 lncRNA downstream 365774 187152 ~ 187430 (-) False CI01000352_00186554_00189415
TU585424 lncRNA downstream 366379 186555 ~ 186825 (-) False CI01000352_00186554_00189415
TU585423 lncRNA downstream 367715 185255 ~ 185489 (-) True G510578
TU585496 lncRNA upstream 43661 599025 ~ 602879 (-) False G510643
TU585497 lncRNA upstream 43661 599025 ~ 602879 (-) True G510643
TU585637 lncRNA upstream 91126 646490 ~ 649239 (-) False G510775
TU585638 lncRNA upstream 91126 646490 ~ 688850 (-) True G510775
TU585636 lncRNA upstream 178542 733906 ~ 737707 (-) True G510774
CI01000352_00549005_00551748.mRNA mRNA downstream 1430 548979 ~ 551774 (-) True CI01000352_00549005_00551748
CI01000352_00478813_00480433.mRNA mRNA downstream 70520 478120 ~ 482684 (-) True CI01000352_00478813_00480433
CI01000352_00472719_00476864.mRNA mRNA downstream 75129 472600 ~ 478075 (-) True CI01000352_00472719_00476864
CI01000352_00447631_00450928.mRNA mRNA downstream 102130 447592 ~ 451074 (-) True CI01000352_00447631_00450928
CI01000352_00402976_00419805.mRNA mRNA downstream 132611 402518 ~ 420593 (-) True CI01000352_00402976_00419805
CI01000352_00558495_00562831.mRNA mRNA upstream 3131 558495 ~ 562953 (-) True CI01000352_00558495_00562831
CI01000352_00564738_00564956.mRNA mRNA upstream 9267 564631 ~ 564956 (-) True CI01000352_00564738_00564956
CI01000352_00574884_00583420.mRNA mRNA upstream 19494 574858 ~ 583420 (-) True CI01000352_00574884_00583420
CI01000352_00853555_00911922.mRNA mRNA upstream 298191 853555 ~ 911922 (-) True CI01000352_00853555_00911922
CI01000352_00936770_00961973.mRNA mRNA upstream 381382 936746 ~ 961973 (-) True CI01000352_00936770_00961973
TU585394 other downstream 462546 87140 ~ 90658 (-) True G510549
TU585859 other upstream 414069 972660 ~ 997817 (-) True G510953
TU586627 other upstream 1520169 2075533 ~ 2085310 (-) True G511618

Expression Profile