RNA id: CI01000352_00936770_00961973.mRNA


Basic Information

Item Value
RNA id CI01000352_00936770_00961973.mRNA
length 1442
RNA type mRNA
GC content 0.53
exon number 7
gene id CI01000352_00936770_00961973
representative True

Chromosome Information

Item Value
chromosome id CI01000352
NCBI id null
chromosome length 2255705
location 936746 ~ 961973 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGTTTGGTGCTGTACATGTATAAGGAGCGCGGTGTGAAGGACAGGAGCAGCGTAACGCTGGAGCACATCTGCGGTCTGGAGGCATGTGTCAGCGCTGATGGCGTTCCCTTCATCCTCTCAATACTGTGTCTCAGTCAAACTGCCATGCTTGGCTTTGACAGCAGGGAGGCGCTGCAGAGCTGGGACCTGCGACTACGCTACTGCCTTGGGGAAGTCCACAGTTTCAGCGTCTCTGTGCTTCCCGGCACTAAACTGGAAAGTGGAGCGGCGACTCTGCATTTATGCAACAATGTCCTGGTCATCGCTAAAGACCTGCCGGCCGTCATCATTGGCCACTGGAATCTGCTGGACCTGCGGAGATACGGGCCAGTCAACAACGGCTTTGTGTTTGAGGGAGGAACACGCTGTGGTTACTGGGCCGGCGTGTTCCTCCTGTCATGTGCTGAGGGCGAGCAGATCAGTTTTCTGTTTGACTGTATTGTTCGTGGCATTTCCCCGTCCAGAGGCCCTTTTGGACTGAAGCCACCGCTACCAGAGCCCAGTGTCAATGCAGCTTTAGTGCAGGACAGACTAAACCATGAAGCGGAGGAATTGGAACGGAGGCTCAGTCTGCTGTCTCATAGCACAGCTTCCAGCTCCCATTTCGGCTCTTCGATGACAGCAGACGACCGCAGCATATCTGGTTCATCTGACACCTCAGACACAGATTGCAGCATTAGCAGTCGCTCTGCACCATGGACCGATCTGGTTCTGCCCAGCACTGCAGAAACTCCTCACCCGCAAGCATCTCAGGTCGAAGAGAAACTCTCCGCTGAACTCAAGGTCCCAAATGATCCCGTTTGCTCACGGAAGCTAAAAGAAACCGGCCGACAGAACTCATCCGACAGTGGCATTGCGACGGGAAGCCACTCGTCTTACACAGGAAGCTTCTCTTCCTACAGCGGCAGTCTGGATGCTGCTGGTCCGGGGGAGGAATACGGCATGCCGTTCAACCTGGCACCACCTGCTATCCCAGAAAAACACCTGTGCACATGCAATCATGAGTACCAAATTCCCTCTTCCCTACGATACCTTTACGACTCTCCCCGGAGTCTGCTTGAGATCACCAGTGCTCCCGAGGACAACAGAGACAGTAGCAGATCTCAAAATGATACTGGACTTATAGAGCCATTCGTCCGGAAACAGTCTGAAGAATATTCAGAATCCCCCAGCCAATCAGATTCTGGCTCAGCTCTGATTTATTCTCTGGAGCTTGTCGGCTCTAAATCGGTCGTCACTACCTGCCCCATCTGCAGAGGACTCAAGGGCACATTCCTGCCTCATCCTGGAGGGACTTTACTGCCCACTGTGCCAAGTAAGATTCCTGCAGCCAGTATATCTCTTTACAACCTCTCCCTCATTCTGCATGTCCCATAATGAAATGCTTAAAAGGTTATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585691 lncRNA downstream 114615 821833 ~ 822131 (-) True G510820
TU585725 lncRNA downstream 119072 817326 ~ 817674 (-) True G510851
TU585716 lncRNA downstream 122687 813169 ~ 814059 (-) True G510845
TU585718 lncRNA downstream 123816 812467 ~ 812930 (-) False G510846
TU585906 lncRNA upstream 36979 998952 ~ 999156 (-) True G510998
TU585908 lncRNA upstream 38884 1000857 ~ 1001094 (-) True G511000
TU585914 lncRNA upstream 49274 1011247 ~ 1011621 (-) True G511005
TU585915 lncRNA upstream 50469 1012442 ~ 1012771 (-) True G511006
TU585912 lncRNA upstream 51928 1021977 ~ 1022141 (-) True CI01000352_01020693_01021619
CI01000352_00853555_00911922.mRNA mRNA downstream 24824 853555 ~ 911922 (-) True CI01000352_00853555_00911922
CI01000352_00574884_00583420.mRNA mRNA downstream 353326 574858 ~ 583420 (-) True CI01000352_00574884_00583420
CI01000352_00564738_00564956.mRNA mRNA downstream 371790 564631 ~ 564956 (-) True CI01000352_00564738_00564956
CI01000352_00558495_00562831.mRNA mRNA downstream 373793 558495 ~ 562953 (-) True CI01000352_00558495_00562831
CI01000352_00553364_00555334.mRNA mRNA downstream 381382 553204 ~ 555364 (-) True CI01000352_00553364_00555334
CI01000352_00969428_00970236.mRNA mRNA upstream 7250 969223 ~ 970236 (-) False CI01000352_00969428_00970236
CI01000352_00980253_00998005.mRNA mRNA upstream 18197 980170 ~ 998005 (-) False CI01000352_00980253_00998005
CI01000352_01015676_01018437.mRNA mRNA upstream 53688 1015661 ~ 1018437 (-) False CI01000352_01015676_01018437
CI01000352_01020693_01021619.mRNA mRNA upstream 58720 1020693 ~ 1023846 (-) False CI01000352_01020693_01021619
CI01000352_01028559_01034351.mRNA mRNA upstream 66401 1028374 ~ 1034642 (-) False CI01000352_01028559_01034351
TU585394 other downstream 846088 87140 ~ 90658 (-) True G510549
TU585859 other upstream 7460 972660 ~ 997817 (-) True G510953
TU586627 other upstream 1113560 2075533 ~ 2085310 (-) True G511618

Expression Profile