XLOC_014100 (atat1)


Basic Information

Item Value
gene id XLOC_014100
gene name atat1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27479563 ~ 27515651 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028097
CAGCAGGACCACGCGTCGTTGCCAAGAGGAAACGGAAATAAATCAAAAGCAGCAAATTTTTCCTACTcctattattatacttattattatccTCATCATCTCGATTTCAGAGCTATAATATTAACCCTTAAACATTTGTATCTACTATTGTGAGACTTTAGCGGTATTTTGGCGTTTTGAATCCAGCAGGCGTGTGTTTTAACAGCACTACGGCGCATCACTAGCCCTCGTCCCGCACCAGGGagtgacacacaaacacaatggaaGGACAGAGGCAGCATTGATAAGACCGCTACTACATCTGTGCCTTTAACCAACCTGCTAATGAAGCGGCACTAATGTGAATCTGCTATATTTGAAGTGCAGGCCGGTGATGCATTGAGAATCGATATCCGCTGTGATAAATGCATCCGAATCTGCAGCAGGGGCATTAGGAGTTTATTATCTTTAGATTTCAGATCTGCAATGGATTTCCCTTACGACCTGAATGCGCTTTTCCCCGAGAGGATTTCAGTGTTGGATAGTAACTTGAGTGCAGGTCGGAAAGCGCATGGGAGACCAGATCCTCTTCCACAGGTCACCACAGTTATAGACGAGCTAGGCAAAGCTTCCTCGAAGGCCCAGCAGCTGCCTGCGCCTATTACCAGTGCTGCAAAGCTCCAGGCCAACAGACATCATCTCTACCTCCTGAAAGATGGAGAACAGAACGGCGGGAGGGGTGTTATAGTTGGATTTCTGAAGGTTGGCTACAAGAAGCTCTTTTTACTTGACCAACGGGGGGCGCATTTGGAGACCGAGCCATTGTGTGTGCTGGATTTCTATGTGACAGAGACCCTACAAAGACATGGCTATGGCTCAGAGCTCTTCGACTTCATGCTAAAACACAAACAGGTGGAGCCTGCGCAGATGGCGTATGATAGACCATCGCCTAAATTCCTGTCATTTCTTGAAAAACGTTATGATCTCAGAAACAGCGTGCCTCAGGTCAATAACTTTGTGGTGTTTGCTGGGTTCTTCCAGAGTAGATCAGGAACACCTCCCTCCCCTCTGACGGATCAGGGGATGTATGGATTTTTCGGTCCAACTGAGAAAAGTTCCCCCAAGAAAGCCAGAGGGAGAGATCAAACCTTATTCGCTAATGGAAAGAGAAGTGGTTCGGGAGGAGCAGAGGGTTCTCCCCTGGCCATTTGTTCGCCCCGGGGGTCCCCCCCACTCTCCCCCTCTACTTCCGTCATCTCCTCAATCCCGTTCTCTCAGTGTGGGATCCTCCCCCAGCCGGGCCCCGCTTCGCCCCGCCGCGGCCACGGTCCTCCAGCAGGGTCAGACCCCCTCATCCCCGCTCAACGACAGCTGCAGGGCAAAACGCACCAGTTCTCTAAATAGATCTAGGCTTAGCTTCCATTGACATTCAGTGCTTAGTGCCATTATCTTCAACCTCGTAGCTAGTTTCAATTttaggcatagttcacccaacaatgaCAATTCCATCATTTGATCACCTTTGACTTTGCTctgaagcagatattttgaagcatgttgGAAACCTAGTAGGAAGAACATGACATGGAGTTTAGTGGTTACaggttcccaacattcttcaaaatatcttcttttgatcTGTGTGAAATCCATGTTTGTGTTCCACAAATGAAATGACAACCTTCAGGGAACGTATGACAGAGCTGTCATTGCTGGATGAACTACTGGTTTAgcttttttttgctctgttgtgACTGTATGAAAGGTACGGATTCCTGCTAAAGGATTTGAtaatacatatttgtaattcaatTGGCATCTCTTTTTGGTCTTTTTCTCTACGCTTTCCACAAAAGTGTGTTTTAGAATTTAGGATTTTTACTGAGTTTACAACAGTGTTAACCCTCTGCTGTCAAATGTCCCCTGTGCTGAGCAGCaagtaataaaaacatttgaaaaaaaaaaa
>TCONS_00028098
GGAAACGGAAATAAATCAAAAGCAGCAAATTTTTCCTACTcctattattatacttattattatccTCATCATCTCGATTTCAGAGCTATAATATTAACCCTTAAACATTTGTATCTACTATTGTGAGACTTTAGCGGTATTTTGGCGTTTTGAATCCAGCAGGCGTGTGTTTTAACAGCACTACGGCGCATCACTAGCCCTCGTCCCGCACCAGGGagtgacacacaaacacaatggaaGGACAGAGGCAGCATTGATAAGACCGCTACTACATCTGTGCCTTTAACCAACCTGCTAATGAAGCGGCACTAATGTGAATCTGCTATATTTGAAGTGCAGGCCGGTGATGCATTGAGAATCGATATCCGCTGTGATAAATGCATCCGAATCTGCAGCAGGGGCATTAGGAGTTTATTATCTTTAGATTTCAGATCTGCAATGGATTTCCCTTACGACCTGAATGCGCTTTTCCCCGAGAGGATTTCAGTGTTGGATAGTAACTTGAGTGCAGGTCGGAAAGCGCATGGGAGACCAGATCCTCTTCCACAGGTCACCACAGTTATAGACGAGCTAGGCAAAGCTTCCTCGAAGGCCCAGCAGCTGCCTGCGCCTATTACCAGTGCTGCAAAGCTCCAGGCCAACAGACATCATCTCTACCTCCTGAAAGATGGAGAACAGAACGGCGGGAGGGGTGTTATAGTTGGATTTCTGAAGGTTGGCTACAAGAAGCTCTTTTTACTTGACCAACGGGGGGCGCATTTGGAGACCGAGCCATTGTGTGTGCTGGATTTCTATGTGACAGAGACCCTACAAAGACATGGCTATGGCTCAGAGCTCTTCGACTTCATGCTAAAACACAAACAGGTGGAGCCTGCGCAGATGGCGTATGATAGACCATCGCCTAAATTCCTGTCATTTCTTGAAAAACGTTATGATCTCAGAAACAGCGTGCCTCAGGTCAATAACTTTGTGGTGTTTGCTGGGTTCTTCCAGAGTAGATCAGGAACACCTCCCTCCCCTCTGACGGATCAGGGGATGTATGGATTTTTCGGTCCAACTGAGAAAAGTTCCCCCAAGAAAGCCAGAGGGAGAGATCAAACCTTATTCGCTAATGGAAAGAGAAGTGGTTCGGGAGGAGCAGAGGGTTCTCCCCTGGCCATTTGTTCGCCCCGGGGGTCCCCCCCACTCTCCCCCTCTACTTCCGTCATCTCCTCAATCCCGTTCTCTCAGTGTGGGATCCTCCCCCAGCCGGGCCCCGCTTCGCCCCGCCGCGGCCACGGTCCTCCAGCAGGGTCAGACCCCCTCATCCCCGCTCAACGACAGCTGCAGGGCAAAACGCACCAGTCATCAGGGTCTAGTTGCCAGGAGCAACCTCTACAGTCGACATTTCACCAGCCGAGACCTTGGGCAGTTATTGGCGGAACGGCAGAAGCTTCCAGTTGTCGTATGTGTTCCTCAGGGCTGAAAGTGTGTGACACAGAGGCAAAGGCAGAGGCAGAGGAACACAAACGCATTTCTGAAAGACCTCATTTTCAAAGCCAGATTGTGTCTCCTCCGACGCTTGCCAGTTCCCAGAAAGATGATCTTCAGAATCAGACCTCCATAGAAGAAGATCCAAACATTGAGCCGAAGACTACTAAAGTGTCGCAGAAAACAGCAGACGACTGGAGGAAAAGTGAAGCGTCTGAGCTCTCGAGGGCTGGAGGAAGAAGCGGATGGTCTTGGACGGTTGGAGAGAGTCACTATACGGCTCAATGGGTCCGACAGAAACAAGAGTATCGCAGTACACGACCCTGGTGATGGAAATCATATATACAGTGggagaaataagtattgaacatgtcaccctttttctcagaaaacatatttctaaaggggcTGTTGATCTGAAATTGTCACCGGATGTTGGTTACAACCAAATaaattcatatatgcaaagaaaacaaagctaattaccttacaaattaagttatgtgttataaaataaaaggaaaaagcattgaacacatgaagaaagggaggtttaGAAAGGCAGGGAAAGCCTCACAGTAGCTATTTAGCAACACTCTGCCTTTCGTCATTGTAAGTAATATccgctgcttcagtccagcatctacattaccaggatgatcaagatgaaaccagagttgacatttcagcaag
>TCONS_00028099
CAGCATTGATAAGACCGCTACTACATCTGTGCCTTTAACCAACCTGCTAATGAAGCGGCACTAATGTGAATCTGCTATATTTGAAGTGCAGGCCGGTGATGCATTGAGAATCGATATCCGCTGTGATAAATGCATCCGAATCTGCAGCAGGGGCATTAGGAGTTTATTATCTTTAGATTTCAGATCTGCAATGGATTTCCCTTACGACCTGAATGCGCTTTTCCCCGAGAGGATTTCAGTGTTGGATAGTAACTTGAGTGCAGGTCGGAAAGCGCATGGGAGACCAGATCCTCTTCCACAGGTCACCACAGTTATAGACGAGCTAGGCAAAGCTTCCTCGAAGGCCCAGCAGCTGCCTGCGCCTATTACCAGTGCTGCAAAGCTCCAGGCCAACAGACATCATCTCTACCTCCTGAAAGATGGAGAACAGAACGGCGGGAGGGGTGTTATAGTTGGATTTCTGAAGGTTGGCTACAAGAAGCTCTTTTTACTTGACCAACGGGGGGCGCATTTGGAGACCGAGCCATTGTGTGTGCTGGATTTCTATGTGACAGAGACCCTACAAAGACATGGCTATGGCTCAGAGCTCTTCGACTTCATGCTAAAACACAAACAGGTGGAGCCTGCGCAGATGGCGTATGATAGACCATCGCCTAAATTCCTGTCATTTCTTGAAAAACGTTATGATCTCAGAAACAGCGTGCCTCAGGTCAATAACTTTGTGGTGTTTGCTGGGTTCTTCCAGAGTAGATCAGCGGTCCAACTGAGAAAAGTTCCCCCAAGAAAGCCAGAGGGAGAGATCAAACCTTATTCGCTAATGGAAAGAGAAGTGGTTCGGGAGGAGCAGAGGGTTCTCCCCTGGCCATTTGTTCGCCCCGGGGGTCCCCCCCACTCTCCCCCTCTACTTCCGTCATCTCCTCAATCCCGTTCTCTCAGTGTGGGATCCTCCCCCAGCCGGGCCCCGCTTCGCCCCGCCGCGGCCACGGTCCTCCAGCAGGGTCAGACCCCCTCATCCCCGCTCAACGACAGCTGCAGGGCAAAACGCACCAGTTCTCTAAATAGATCTAGGCTTAGCTTCCATTGACATTCAGTGCTTAGTGCCATTATCTTCAACCTCGTAGCTAGTTTCAATTttaggcatagttcacccaacaatgaCAATTCCATCATTTGATCACCTTTGACTTTGCTctgaagcagatattttgaagcatgttgGAAACCTAGTAGGAAGAACATGACATGGAGTTTAGTGGTTACaggttcccaacattcttcaaaatatcttcttttgatcTGTGTGAAATCCATGTTTGTGTTCCACAAATGAAATGACAACCTTCAGGGAACGTATGACAGAGCTGTCATTGCTGGATGAACTACTGGTTTAgcttttttttgctctgttgtgACTGTATGAAAGGTACGGATTCCTGCTAAAGGATTTGAtaatacatatttgtaattcaatTGGCATCTCTTTTTGGTCTTTTTCTCTACGCTTTCCACAAAAGTGTGTTTTAGAATTTAGGATTTTTACTGAGTTTACAACAGTGTTAACCCTCTGCTGTCAAATGTCCCCTGTGCTGAGCAGCaagtaataaaaacatttgaaaaaaaaaaa

Function

symbol description
atat1 Enables tubulin N-acetyltransferase activity. Acts upstream of or within alpha-tubulin acetylation. Predicted to be located in several cellular components, including clathrin-coated pit; focal adhesion; and microtubule cytoskeleton. Orthologous to human ATAT1 (alpha tubulin acetyltransferase 1).

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0071929 alpha-tubulin acetylation biological_process
GO:0048666 neuron development biological_process
GO:0042995 cell projection cellular_component
GO:0030424 axon cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0005925 focal adhesion cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004468 lysine N-acetyltransferase activity, acting on acetyl phosphate as donor molecular_function
GO:0019799 tubulin N-acetyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-2120 Enables tubulin N-acetyltransferase activity. Acts upstream of or within alpha-tubulin acetylation. Predicted to be located in several cellular components, including clathrin-coated pit; focal adhesion; and microtubule cytoskeleton. Orthologous to human ATAT1 (alpha tubulin acetyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000004472

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028097 False 1945 mRNA 0.46 11 27479563 27506368
TCONS_00028098 False 2163 mRNA 0.48 13 27479590 27515651
TCONS_00028099 True 1624 mRNA 0.46 10 27479838 27506368

Neighbor

gene id symbol gene type direction distance location
XLOC_014099 ppp1r11 coding upstream 25919 27448625 ~ 27453644 (+)
XLOC_014098 ddx39b coding upstream 121018 27339848 ~ 27358545 (+)
XLOC_014097 NA coding upstream 438035 27033873 ~ 27041528 (+)
XLOC_014096 tnfa coding upstream 455544 27019432 ~ 27024019 (+)
XLOC_014095 nelfe coding upstream 546734 26922780 ~ 26932829 (+)
XLOC_014101 C19H5orf49 coding downstream 73550 27589201 ~ 27608549 (+)
XLOC_014102 nsun2 coding downstream 343215 27858866 ~ 27902509 (+)
XLOC_014103 med10 coding downstream 454641 27970292 ~ 27974151 (+)
XLOC_014104 NA coding downstream 459014 27974665 ~ 27976483 (+)
XLOC_014105 irx4b coding downstream 598852 28114503 ~ 28262897 (+)
XLOC_014093 FP085398.3 non-coding upstream 673681 26805766 ~ 26805882 (+)
XLOC_014090 FP017254.1 non-coding upstream 902855 26576594 ~ 26576708 (+)
XLOC_014087 BX842609.1 non-coding upstream 1286627 26192822 ~ 26192936 (+)
XLOC_014081 CR855860.3 non-coding upstream 2304171 25175272 ~ 25175392 (+)
XLOC_014106 BX511306.1 non-coding downstream 627484 28143135 ~ 28143254 (+)
XLOC_014109 NA non-coding downstream 1273317 28788968 ~ 28824390 (+)
XLOC_014110 NA non-coding downstream 1590284 29105935 ~ 29107694 (+)
XLOC_014111 CU469458.1 non-coding downstream 1687491 29203142 ~ 29203257 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_09841097_09848347 ATAT1 coding CI01000054 null 9841014 ~ 9848892 (-)