XLOC_014103 (med10)


Basic Information

Item Value
gene id XLOC_014103
gene name med10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27970292 ~ 27974151 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028104
CAACGAAAGCTCTGTTACCCGGGTGACAGTCCATTCTCGCACACTATTGGATGGAAGGCAGCCGGAAAGCAGTTTGCTGTCATGGGAGCTACGCTAAGTGAGCGGATGACTATCTTTTGTCAATAAGTATACAGTTATATTCTTATTTAATCGACCGTGCGCTTAAATTTACGTTAAATTAACCTCGCCATGGCGGAGAAGTTTGATAACCTCGAGGAGCACCTCGAAAAATTCGTCGAAAACATACGACAGCTCGGAATTATCGTCAGCGACTTCCAGCCCAGCAGTCAAACAGGACTCAACCAGAAACTgaACTTTATGATCACAGGACTTCAGGATATTGAGAAATGTCGACAGCAGCTTCATGATATCAACGTACCTTTGGAAGTGTTCGAGTATATTGATCAGGGTCGTAACCCACAGCTCTACACCAAGGAGTGCTTGGAAAGAGCACTGGCTAAAAATGAACAAGTCAAAGGAAAGATTGACACCTTGACTAAATTTAAAAGCCTCCTCATTTCTGAGCTGGGAAAGGTTTTTCCTGAAGAAATGGCTAAATATAAGGCCATTCACGGTGATGACCCTCCTTCATGATTTACCAGTGCCACAACACTTCAAGTGCGAGATGTACATATGTTGATATTTATGTGACATGCTTTTTCAAATCATTGTTCggatttttacagcttttttatctTTGTATTCCACACATTTACAGACTCAAAACTGGGGGGATATTttgaaaacatcctcaaaacagtgaaaacattttttttctcatgcACTGTAATTTTCGcagcataatttttatttttcagttgaataaatgGGTGATCCCCAAAATTC
>TCONS_00028105
CGCTAAGTGAGCGGATGACTATCTTTTGTCAATAAGTATACAGTTATATTCTTATTTAATCGACCGTGCGCTTAAATTTACGTTAAATTAACCTCGCCATGGCGGAGAAGTTTGATAACCTCGAGGAGCACCTCGAAAAATTCGTCGAAAACATACGACAGCTCGGAATTATCGTCAGCGACTTCCAGCCCAGCAGTCAAACAGGACTCAACCAGAAACTgaACTTTATGATCACAGGACTTCAGGATATTGAGAAATGTCGACAGCAGCTTCATGATATCAACGTACCTTTGGAAGTGTTCGAGTATATTGATCAGGGTCGTAACCCACAGCTCTACACCAAGGAGTGCTTGGAAAGAGCACTGGCTAAAAATGAACAAGTCAAAGGAAAGATTGACACCTTGACTagaatggtttgaaaaagaaagaaaaaatccactcgttacaaccgaggtatgcagaagagcatctctgagcacACAACATATCACAACTTGATGGGCTACAACAgctgaagaccacaccgggtgccattcctgtcagctaagaacaggaaactaaggttACAATTCTCACAGGATaagcaaaattggacaatagaagattggaaaaacgttgcctggtctgatgagtctcaatttctgctgcgacattcgg

Function

symbol description
med10 Predicted to enable transcription coregulator activity. Acts upstream of or within atrioventricular canal development and cardiac jelly development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Predicted to be active in chromatin. Orthologous to human MED10 (mediator complex subunit 10).

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007275 multicellular organism development biological_process
GO:1905072 cardiac jelly development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-070117-2423 Predicted to enable transcription coregulator activity. Acts upstream of or within atrioventricular canal development and cardiac jelly development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Predicted to be active in chromatin. Orthologous to human MED10 (mediator complex subunit 10).

Ensembl:

ensembl_id ENSDARG00000070623

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028104 False 846 mRNA 0.40 4 27970292 27974151
TCONS_00028105 True 657 mRNA 0.43 4 27970383 27972821

Neighbor

gene id symbol gene type direction distance location
XLOC_014102 nsun2 coding upstream 67783 27858866 ~ 27902509 (+)
XLOC_014101 C19H5orf49 coding upstream 361743 27589201 ~ 27608549 (+)
XLOC_014100 atat1 coding upstream 454641 27479563 ~ 27515651 (+)
XLOC_014099 ppp1r11 coding upstream 516648 27448625 ~ 27453644 (+)
XLOC_014098 ddx39b coding upstream 611747 27339848 ~ 27358545 (+)
XLOC_014104 NA coding downstream 514 27974665 ~ 27976483 (+)
XLOC_014105 irx4b coding downstream 140352 28114503 ~ 28262897 (+)
XLOC_014106 BX511306.1 coding downstream 168984 28143135 ~ 28143254 (+)
XLOC_014107 mrpl36 coding downstream 309969 28284120 ~ 28290213 (+)
XLOC_014108 lpcat1 coding downstream 316911 28291062 ~ 28334164 (+)
XLOC_014097 NA non-coding upstream 928764 27033873 ~ 27041528 (+)
XLOC_014093 FP085398.3 non-coding upstream 1164410 26805766 ~ 26805882 (+)
XLOC_014090 FP017254.1 non-coding upstream 1393584 26576594 ~ 26576708 (+)
XLOC_014087 BX842609.1 non-coding upstream 1777356 26192822 ~ 26192936 (+)
XLOC_014081 CR855860.3 non-coding upstream 2794900 25175272 ~ 25175392 (+)
XLOC_014109 NA non-coding downstream 814817 28788968 ~ 28824390 (+)
XLOC_014110 NA non-coding downstream 1131784 29105935 ~ 29107694 (+)
XLOC_014111 CU469458.1 non-coding downstream 1228991 29203142 ~ 29203257 (+)

Expression


Co-expression Network