RNA id: TCONS_00028105


Basic Information

Item Value
RNA id TCONS_00028105
length 657
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_014103
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27970292 ~ 27974151 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTAAGTGAGCGGATGACTATCTTTTGTCAATAAGTATACAGTTATATTCTTATTTAATCGACCGTGCGCTTAAATTTACGTTAAATTAACCTCGCCATGGCGGAGAAGTTTGATAACCTCGAGGAGCACCTCGAAAAATTCGTCGAAAACATACGACAGCTCGGAATTATCGTCAGCGACTTCCAGCCCAGCAGTCAAACAGGACTCAACCAGAAACTgaACTTTATGATCACAGGACTTCAGGATATTGAGAAATGTCGACAGCAGCTTCATGATATCAACGTACCTTTGGAAGTGTTCGAGTATATTGATCAGGGTCGTAACCCACAGCTCTACACCAAGGAGTGCTTGGAAAGAGCACTGGCTAAAAATGAACAAGTCAAAGGAAAGATTGACACCTTGACTagaatggtttgaaaaagaaagaaaaaatccactcgttacaaccgaggtatgcagaagagcatctctgagcacACAACATATCACAACTTGATGGGCTACAACAgctgaagaccacaccgggtgccattcctgtcagctaagaacaggaaactaaggttACAATTCTCACAGGATaagcaaaattggacaatagaagattggaaaaacgttgcctggtctgatgagtctcaatttctgctgcgacattcgg

Function

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007275 multicellular organism development biological_process
GO:1905072 cardiac jelly development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-070117-2423 Predicted to enable transcription coregulator activity. Acts upstream of or within atrioventricular canal development and cardiac jelly development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Predicted to be active in chromatin. Orthologous to human MED10 (mediator complex subunit 10).

Ensembl:

ensembl_id ENSDART00000145549

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028103 lncRNA upstream 78328 27887318 ~ 27892055 (+) True XLOC_014102
TCONS_00028095 lncRNA upstream 615517 27354345 ~ 27354866 (+) True XLOC_014098
TCONS_00029916 lncRNA upstream 928855 27033873 ~ 27041528 (+) True XLOC_014097
TCONS_00028060 lncRNA upstream 2817806 25151416 ~ 25152577 (+) True XLOC_014079
TCONS_00029915 lncRNA upstream 2909416 25003517 ~ 25060967 (+) True XLOC_014078
TCONS_00029917 lncRNA downstream 1844 27974665 ~ 27976483 (+) True XLOC_014104
TCONS_00029918 lncRNA downstream 141693 28114514 ~ 28187683 (+) False XLOC_014105
TCONS_00029919 lncRNA downstream 142984 28115805 ~ 28195442 (+) False XLOC_014105
TCONS_00029920 lncRNA downstream 143080 28115901 ~ 28187683 (+) False XLOC_014105
TCONS_00029921 lncRNA downstream 143101 28115922 ~ 28118609 (+) False XLOC_014105
TCONS_00028101 mRNA upstream 67874 27858866 ~ 27902509 (+) False XLOC_014102
TCONS_00028102 mRNA upstream 68373 27859546 ~ 27902010 (+) False XLOC_014102
TCONS_00028100 mRNA upstream 361834 27589201 ~ 27608549 (+) True XLOC_014101
TCONS_00028098 mRNA upstream 454732 27479590 ~ 27515651 (+) False XLOC_014100
TCONS_00028097 mRNA upstream 464015 27479563 ~ 27506368 (+) False XLOC_014100
TCONS_00028106 mRNA downstream 141682 28114503 ~ 28262897 (+) False XLOC_014105
TCONS_00028107 mRNA downstream 142980 28115801 ~ 28262897 (+) False XLOC_014105
TCONS_00028108 mRNA downstream 143589 28116410 ~ 28262897 (+) False XLOC_014105
TCONS_00028110 mRNA downstream 214659 28187480 ~ 28262897 (+) False XLOC_014105
TCONS_00028111 mRNA downstream 283255 28256076 ~ 28261976 (+) True XLOC_014105
TCONS_00028091 other upstream 1038950 26928624 ~ 26931433 (+) True XLOC_014095
TCONS_00028082 other upstream 1164501 26805766 ~ 26805882 (+) True XLOC_014093
TCONS_00028077 other upstream 1393675 26576594 ~ 26576708 (+) True XLOC_014090
TCONS_00028073 other upstream 1777447 26192822 ~ 26192936 (+) True XLOC_014087
TCONS_00028068 other upstream 2458821 25508793 ~ 25511562 (+) True XLOC_014083
TCONS_00028109 other downstream 170314 28143135 ~ 28143254 (+) True XLOC_014106
TCONS_00028114 other downstream 318555 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028117 other downstream 348858 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028118 other downstream 358406 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028122 other downstream 1230321 29203142 ~ 29203257 (+) True XLOC_014111

Expression Profile

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