XLOC_014154 (fam8a1a)


Basic Information

Item Value
gene id XLOC_014154
gene name fam8a1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32201991 ~ 32206819 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028186
GAGAAGATTAGCCTCTTTAGTGAGTGGAAGGAAGTGAAAATAGGATTTATTTAAGAGGTGAACATGGCAAAGAAGAACAGTGCGAAAGAGGCGGACAAAAACGGCGAAGGAGCCAATGACGATGATAAGATGACAACGAACGAGTACTGCGCGCGGCTGCAGCAGTGGATGTGGCGCTACTACAGCGGATATGTGAGCTGGCAGAGCTGGGTGTTGATGTCCGCGCCGCTCTTTCCTCCGCCTCAGTTCGGTTGCCAGGCACCGGGCAGCTCTGCATCCGTGTATCCCACAACGCCGGCGGACATCGCCGCCTGGTACAACCAAATGAGCAGCCCGGGAGCCATCCGTCCAGCAGACACCGCCACATCCAGCACTGGGGACAGAGGGGCAGCACAGCCCGCAGGTAGAGAATACATTATACCCTCTCCTCTACGCAGATTTCTGGCTGAAACTGTCGATTTCTTCATTCTCTTCTGTGTGAAAGCAACCATAGTGTTGTGGATCATGCATCTCTGTGGAATGAAAGATATTTCCAAATTCATAATGCAGTTTATAGTGGAAGAGATTGATGAGAACACGTCATTGGAGGACCTGCAGAAGATGATGGTCGTGGCTTTAGCATACAGAGTACTGGTGTGTGTTTATGAAATCATCTGTATTTGGGGAGCTGGAGGTGCCACTCCAGGAAAGTTTCTTTTGGGTCTTCGAGTCGTCTCATGTGACACGACAGTCCTGGTGCAACCGAATCGGGTTTTGGTGGTACCAGCATCCACTGTCAGCTTATCTGCCTCCACAGTACGGGCCTTAAACAAAAACTTCTCCATCGCTTTCCTCTTCCCAATCTTTATCACACTACTCTTTTTCCAGCACAACAGAACTGTTTATGATGTTGTG

Function

symbol description
fam8a1a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FAM8A1 (family with sequence similarity 8 member A1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-66 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FAM8A1 (family with sequence similarity 8 member A1).

Ensembl:

ensembl_id ENSDARG00000017111

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028186 True 894 mRNA 0.50 5 32201991 32206819

Neighbor

gene id symbol gene type direction distance location
XLOC_014153 fabp11a coding upstream 32830 32166702 ~ 32169161 (+)
XLOC_014152 mrpl53 coding upstream 37459 32158010 ~ 32164532 (+)
XLOC_014151 BX119962.1 coding upstream 143392 32058477 ~ 32058599 (+)
XLOC_014150 NA coding upstream 232225 31954959 ~ 31969766 (+)
XLOC_014149 NA coding upstream 247263 31943508 ~ 31954728 (+)
XLOC_014155 atxn1a coding downstream 50653 32257472 ~ 32461596 (+)
XLOC_014156 heyl coding downstream 347055 32553874 ~ 32560591 (+)
XLOC_014157 tmem54b coding downstream 396808 32603627 ~ 32619257 (+)
XLOC_014158 NA coding downstream 509759 32716578 ~ 32718796 (+)
XLOC_014159 NA coding downstream 558464 32765283 ~ 32780918 (+)
XLOC_014146 NA non-coding upstream 342451 31800505 ~ 31859540 (+)
XLOC_014144 BX957279.1 non-coding upstream 610451 31591524 ~ 31591540 (+)
XLOC_014169 NA non-coding downstream 1588929 33795748 ~ 33798410 (+)
XLOC_014171 dre-mir-187 non-coding downstream 1928788 34135607 ~ 34135695 (+)
XLOC_014173 BX649545.1 non-coding downstream 2000343 34207162 ~ 34207280 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07368294_07372480 FAM8A1A coding CI01000054 null 7368092 ~ 7373799 (-)