XLOC_014152 (mrpl53)


Basic Information

Item Value
gene id XLOC_014152
gene name mrpl53
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32158010 ~ 32164532 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028184
ACAGAAAGATGGCGGCGTCCAAGAAGGCAGGAGTAGTATTGAAGACGGTTAAGCAAATCATTGTACAGTTTTGTCCTTTTGATAATAATGCTCGCTCCGCACGAGAGTTTCTGTCCATTGTCTGGTCTGATAGAGCCAGATCCACAAATATGAACTGTGAGGTTATCACACAAGTGAAGCACGACCGATCGGAGCCCACCATTGATGTCATGTTTGTGGATGGAGAAAGGCTGCTGATGAAGGGATCAAATCTAACAATTAAAGAAATCCTCTCTGCCTTACAGAGCCACTGCAGTGCCAAAGATCCTCAGGCTAAAGCAGGAGACAAGAAGTAGTTTATTGGAGATtctgtatatatgtgtgcatgGGTGTGTAATAAATATGGTATGTGTCTTA

Function

symbol description
mrpl53 Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL53 (mitochondrial ribosomal protein L53).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040912-93 Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL53 (mitochondrial ribosomal protein L53).

Ensembl:

ensembl_id ENSDARG00000008920

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028184 True 396 mRNA 0.43 3 32158010 32164532

Neighbor

gene id symbol gene type direction distance location
XLOC_014151 BX119962.1 coding upstream 99411 32058477 ~ 32058599 (+)
XLOC_014150 NA coding upstream 188244 31954959 ~ 31969766 (+)
XLOC_014149 NA coding upstream 203282 31943508 ~ 31954728 (+)
XLOC_014148 tpd52 coding upstream 218971 31904836 ~ 31939039 (+)
XLOC_014147 si:dkeyp-34f6.4 coding upstream 262415 31873308 ~ 31895595 (+)
XLOC_014153 fabp11a coding downstream 2170 32166702 ~ 32169161 (+)
XLOC_014154 fam8a1a coding downstream 37459 32201991 ~ 32206819 (+)
XLOC_014155 atxn1a coding downstream 92940 32257472 ~ 32461596 (+)
XLOC_014156 heyl coding downstream 389342 32553874 ~ 32560591 (+)
XLOC_014157 tmem54b coding downstream 439095 32603627 ~ 32619257 (+)
XLOC_014146 NA non-coding upstream 298470 31800505 ~ 31859540 (+)
XLOC_014144 BX957279.1 non-coding upstream 566470 31591524 ~ 31591540 (+)
XLOC_014158 NA non-coding downstream 552046 32716578 ~ 32718796 (+)
XLOC_014159 NA non-coding downstream 600751 32765283 ~ 32780918 (+)
XLOC_014169 NA non-coding downstream 1631216 33795748 ~ 33798410 (+)
XLOC_014171 dre-mir-187 non-coding downstream 1971075 34135607 ~ 34135695 (+)
XLOC_014173 BX649545.1 non-coding downstream 2042630 34207162 ~ 34207280 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07390631_07391977 MRPL53 coding CI01000054 null 7390586 ~ 7393103 (-)