RNA id: TCONS_00028184


Basic Information

Item Value
RNA id TCONS_00028184
length 396
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_014152
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32158010 ~ 32164532 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAAAGATGGCGGCGTCCAAGAAGGCAGGAGTAGTATTGAAGACGGTTAAGCAAATCATTGTACAGTTTTGTCCTTTTGATAATAATGCTCGCTCCGCACGAGAGTTTCTGTCCATTGTCTGGTCTGATAGAGCCAGATCCACAAATATGAACTGTGAGGTTATCACACAAGTGAAGCACGACCGATCGGAGCCCACCATTGATGTCATGTTTGTGGATGGAGAAAGGCTGCTGATGAAGGGATCAAATCTAACAATTAAAGAAATCCTCTCTGCCTTACAGAGCCACTGCAGTGCCAAAGATCCTCAGGCTAAAGCAGGAGACAAGAAGTAGTTTATTGGAGATtctgtatatatgtgtgcatgGGTGTGTAATAAATATGGTATGTGTCTTA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040912-93 Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL53 (mitochondrial ribosomal protein L53).

Ensembl:

ensembl_id ENSDART00000005255

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029968 lncRNA upstream 188244 31954959 ~ 31969766 (+) True XLOC_014150
TCONS_00029965 lncRNA upstream 203282 31943508 ~ 31954728 (+) False XLOC_014149
TCONS_00029966 lncRNA upstream 203282 31943620 ~ 31954728 (+) False XLOC_014149
TCONS_00029967 lncRNA upstream 203282 31943627 ~ 31954728 (+) True XLOC_014149
TCONS_00029964 lncRNA upstream 275633 31875019 ~ 31882377 (+) True XLOC_014147
TCONS_00029969 lncRNA downstream 93083 32257615 ~ 32368512 (+) False XLOC_014155
TCONS_00029970 lncRNA downstream 552046 32716578 ~ 32718796 (+) True XLOC_014158
TCONS_00029971 lncRNA downstream 600751 32765283 ~ 32780918 (+) True XLOC_014159
TCONS_00028211 lncRNA downstream 1300177 33464709 ~ 33477475 (+) False XLOC_014167
TCONS_00029972 lncRNA downstream 1389081 33553613 ~ 33660936 (+) False XLOC_014168
TCONS_00028182 mRNA upstream 218971 31905002 ~ 31939039 (+) True XLOC_014148
TCONS_00028180 mRNA upstream 218980 31904912 ~ 31939030 (+) False XLOC_014148
TCONS_00028181 mRNA upstream 219062 31904927 ~ 31938948 (+) False XLOC_014148
TCONS_00028179 mRNA upstream 219213 31904836 ~ 31938797 (+) False XLOC_014148
TCONS_00028178 mRNA upstream 262415 31873308 ~ 31895595 (+) False XLOC_014147
TCONS_00028185 mRNA downstream 2170 32166702 ~ 32169161 (+) True XLOC_014153
TCONS_00028186 mRNA downstream 37459 32201991 ~ 32206819 (+) True XLOC_014154
TCONS_00028187 mRNA downstream 92940 32257472 ~ 32461596 (+) False XLOC_014155
TCONS_00028188 mRNA downstream 157265 32321797 ~ 32461596 (+) False XLOC_014155
TCONS_00028189 mRNA downstream 236746 32401278 ~ 32461596 (+) False XLOC_014155
TCONS_00028183 other upstream 99411 32058477 ~ 32058599 (+) True XLOC_014151
TCONS_00028175 other upstream 566470 31591524 ~ 31591540 (+) True XLOC_014144
TCONS_00028174 other upstream 567519 31587931 ~ 31590491 (+) True XLOC_014142
TCONS_00028165 other upstream 809662 31342023 ~ 31348348 (+) True XLOC_014139
TCONS_00028157 other upstream 1267000 30885312 ~ 30891010 (+) True XLOC_014132
TCONS_00028194 other downstream 649788 32814320 ~ 32818574 (+) True XLOC_014160
TCONS_00028217 other downstream 1567630 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028221 other downstream 1971075 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028225 other downstream 2042630 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028229 other downstream 2578174 34742706 ~ 34746733 (+) False XLOC_014179

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_07390631_07391977.mRNA True 1495 mRNA 0.32 3 CI01000054 7390586 ~ 7393103 (-)