XLOC_014155 (atxn1a)


Basic Information

Item Value
gene id XLOC_014155
gene name atxn1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32257472 ~ 32461596 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028187
ACAAATGTCttccaacacccccccccccaactctctctctctctctctctcactctctctctctctctttctccccttGTGGCCAGTAGAGGGCAGACGCCTTGATAAAACCTGTACAGGAATAAATAACCCACTTCCATTACCCTCAGTTTGCACACGTTCTTGATTCTCTGACAATCCCAAACTCTCTGCAACTTGGAGACAGCTGCGGCTGCGAACATAGAGCGAGGAATAAGGCTGTGCTGGAGGCCTGCGCTGAAACTACGAGCCGCGTTGGGATTGTAACGACTTCAATGGGCCACAACACTCACTGAAACACTGGAGGCTACTGAATGAGGTTCTTCCTGCAGTCCTGGAGACTCTCTCTCGGAAGGAAATGATTCCACATGAATTGCATGGACCGCTCTCCCGCAGCAGGTGTGACTTCAATTGCTTAAGACTGAAATCTGTGTCAATCCGACCATAGGCACAGGACACATCCCCTCTCACCACCACTCTCCTCTCTACCCCATTCCCATACTTGCTCCAAGCCAATCAGTAGGAGGGCACACTCTGTTAGCAAGACAAACAGAGACCAGGAGGGAGAGGAAAAGAGCCAAAAAAGGGGAAAGAAAAATCCGGAAAGAGTGGTTCAAGATTTTCAGACACCATGAAGTCAAACCAGGAGCGGAGCAATGAATGCCTGCCCCCAAAGAAGCGTGAAATCCCAGCAAGCACTCTGCCCTCAGAGGAGAAGCCCATGGTGATGGCCCCTGCCAATGAGAGCCAGCGTGGAGGGAACCTGGCTTGGCTTGCCAGTCTGGCCAGTGGGCATGACAAAGGCCGGCTGCACACCAGCACGTCTGCAGAATCAGATGGGCCTCAATATAAACCATTGTCAGCCATGGCTGAGAGCACACCTTCCTCGTCCACACACTCAACCAGAGCTCTATCTGCAGTCACCACCATACCTGCAGTGTACACATCACCTCTCTCCCATTCTCCTAGCGCAATCCAGTACACACCCCTCCCTCACAATATACACTTCATCAACCCTCCTTACTCTGCACCATACGCTGGCTACATTTCTCCACTAGCTCCCCCTTTAGCTGCCACCACTACCACACAACGTGAGATTTATGCCAGCTCCTCCAGTTCTCCAGCATCCAAAATTGATCAGCACCACCAATTGGGCCGTCCTCAAGGCCTGGTCACAACTGACAACACCTCTTCACCTCACTCCACTCAATATGTTCAAATTGCTGGTTCTCCACTAAGCATATCCCCTCGAACTGTTTCGTCACCGCATACACACATGCCCCTACATTTACATCCTCACCACACACTTCCCCTTAGCGGCCCTTCACAGGTCTTAGTCCCATACACAGAAAGTCTTTTACCCAAGAGGGAGGAGATGAGGACCAGGGAGTTGCTGAATGGAGAGCTGGAGAAGGACAGACGTTTTGGTCCATCTTCTGAGTCCAGTGCAGGGAAGCAGGGCAGCACTGCCAAAGGGGGTTCCTCTGCCCAGCAGCACCAGATCCACCAGCAGCAGAGCCCACGTCACTTTGAAGCTCGACATGTTGTGCTACCTGCCGAGTACACGCAGGACAGCACAGCCATGAGGACCTCATTGGTGCTGGTACCTAATAATCATAGCTCCACTAGTGCTGATTCTGGAGGTGCATCAGACAAGCTGCCTCCCTCGACATCCCACCATGAAAAAGGAGGGATTTGTGCTGGCAAACCTGTCTCCCGCAGTTCCTCCTTATCTTCCTCCCTTTCATTTGCTCTTCCCCCTCCACCTGTGGACAATCTTAAGGGAGCAGTTCCAGCGCAGTCTCCTCACGCAGTTATTCAGACCACACTTAACAGCACAGAGTCACTCTCTCTAAGCCTCCCCTCCACTAATTTCTACTCCACCCAGCAGCCTATCATTGGTTACTTTGCCGGCACAGGGCACCAGCAGCCTCTCAGCTACCACACCACCTTACCCCAGCACTTGGTCATCCCTGGAACTCAGCCGGTCATCATCCCAGTAAGTGGAACTGAAGCTACCGCTACATCAACTGCTGCACTGCCCCATGCTTTCGTCACCTCAACAGCCCCCAAAGTGGAGACTTTTGAGTCTCCGGCTCCATACCCCCACCCTGCCACAGCTATGGTTCAAGCCCAGTTGCATTTGCCTGTGGTTCCAGCAACTGCTGGCCTGCTGACAACTCCACCCCCACCCTCAGCTCCTTCAATGCCACCCTACTTCACCAAGGGCTCCATCATCCAATTGGCAGATGGGGAACTGAAGCGGGTGGAAGACCTGAAAACAGAGGATTTCATTCAGAGTGCTGAGATTAGCAACGAGCTGAAGATTGATTCCAGCACTGTAGAGCGCATCGACAGCAGTCATACAGCTAACTTTGCTATAATACAGTTTGCTGTAGGAGCGCAACGCTCACAGGTCAGTGTGGAGGTACTAGTAGAGTATCCTTTCTTTGTGTTCGGCCAGGGCTGGTCATCTTGTTGTCCGGATCGGACTACTCAGCTGCTCGAGCTGCCATGCACCAAGCTTTCAGTGGGTGACGTCTGCATCTCCCTCACCCTGAAGAACCTGAGGAACGGTTCCATCAAGAAGAGCCAGGGGCAAGTCTTGGATGCACCTGCACTCGGTCCACCTCTTAAATCACCAAAAGCACTCTCAAGTGGCGCACGAGGGGGTGTTCGGCACACAGAACAGGAAAATGGACTCGGGCAGTGTGCAGATCAAGGAAGTAGAGGCGGTCAAGGCAATAGAGAAAACGGAGAACTGAGGTTTGGTGAAAGGGACAACTGCAAAGCTCCAACACTCACAGAATCAGAGACCAGCAGTAAACCCACAGGTCGAAAAAGAAGGTGGTCCGCCCCTGAGGGTCGTAAAGTAGAAAATCCAGAAGGAGAGCCCCCTTTAACGTTCCCTAAGCCTTCTTTCATCCCTCAGGAGGTTAAAATCAGTATCGAAGGCAGATCAAATATTGGAAAGTGA
>TCONS_00029969
CCTCAGTTTGCACACGTTCTTGATTCTCTGACAATCCCAAACTCTCTGCAACTTGGAGACAGCTGCGGCTGCGAACATAGAGCGAGGAATAAGGGAATGGTGAGGATAGTCGGAGCCAGACAGAAGCAGACGTGGACAGACAGAGTGGGAATCTTAAGCCGTCCCCTCAGTAGACAACAGCTGGAGGAGAGATCTACACTTTGCCATCACAGACGGACTCTTCTCTCACATTGAACATCCCAAACTTCTACCTGGGCAAGATACATCGCTATCCTCCAACTAGAAATGTTGACAAGCACTGACGGACCATCACAGC
>TCONS_00028188
GGAATGGTGAGGATAGTCGGAGCCAGACAGAAGCAGACGTGGACAGACAGAGTGGGAATCTTAAGCCGTCCCCTCAGTAGACAACAGCTGGAGGAGAGATCTACACTTTGCCATCACAGACGGACTCTTCTCTCACATTGAACATCCCAAACTTCTACCTGGGCAAGATACATCGCTATCCTCCAACTAGGCTGTGCTGGAGGCCTGCGCTGAAACTACGAGCCGCGTTGGGATTGTAACGACTTCAATGGGCCACAACACTCACTGAAACACTGGAGGCTACTGAATGAGGTTCTTCCTGCAGTCCTGGAGACTCTCTCTCGGAAGGAAATGATTCCACATGAATTGCATGGACCGCTCTCCCGCAGCAGGTGTGACTTCAATTGCTTAAGACTGAAATCTGTGTCAATCCGACCATAGGCACAGGACACATCCCCTCTCACCACCACTCTCCTCTCTACCCCATTCCCATACTTGCTCCAAGCCAATCAGTAGGAGGGCACACTCTGTTAGCAAGACAAACAGAGACCAGGAGGGAGAGGAAAAGAGCCAAAAAAGGGGAAAGAAAAATCCGGAAAGAGTGGTTCAAGATTTTCAGACACCATGAAGTCAAACCAGGAGCGGAGCAATGAATGCCTGCCCCCAAAGAAGCGTGAAATCCCAGCAAGCACTCTGCCCTCAGAGGAGAAGCCCATGGTGATGGCCCCTGCCAATGAGAGCCAGCGTGGAGGGAACCTGGCTTGGCTTGCCAGTCTGGCCAGTGGGCATGACAAAGGCCGGCTGCACACCAGCACGTCTGCAGAATCAGATGGGCCTCAATATAAACCATTGTCAGCCATGGCTGAGAGCACACCTTCCTCGTCCACACACTCAACCAGAGCTCTATCTGCAGTCACCACCATACCTGCAGTGTACACATCACCTCTCTCCCATTCTCCTAGCGCAATCCAGTACACACCCCTCCCTCACAATATACACTTCATCAACCCTCCTTACTCTGCACCATACGCTGGCTACATTTCTCCACTAGCTCCCCCTTTAGCTGCCACCACTACCACACAACGTGAGATTTATGCCAGCTCCTCCAGTTCTCCAGCATCCAAAATTGATCAGCACCACCAATTGGGCCGTCCTCAAGGCCTGGTCACAACTGACAACACCTCTTCACCTCACTCCACTCAATATGTTCAAATTGCTGGTTCTCCACTAAGCATATCCCCTCGAACTGTTTCGTCACCGCATACACACATGCCCCTACATTTACATCCTCACCACACACTTCCCCTTAGCGGCCCTTCACAGGTCTTAGTCCCATACACAGAAAGTCTTTTACCCAAGAGGGAGGAGATGAGGACCAGGGAGTTGCTGAATGGAGAGCTGGAGAAGGACAGACGTTTTGGTCCATCTTCTGAGTCCAGTGCAGGGAAGCAGGGCAGCACTGCCAAAGGGGGTTCCTCTGCCCAGCAGCACCAGATCCACCAGCAGCAGAGCCCACGTCACTTTGAAGCTCGACATGTTGTGCTACCTGCCGAGTACACGCAGGACAGCACAGCCATGAGGACCTCATTGGTGCTGGTACCTAATAATCATAGCTCCACTAGTGCTGATTCTGGAGGTGCATCAGACAAGCTGCCTCCCTCGACATCCCACCATGAAAAAGGAGGGATTTGTGCTGGCAAACCTGTCTCCCGCAGTTCCTCCTTATCTTCCTCCCTTTCATTTGCTCTTCCCCCTCCACCTGTGGACAATCTTAAGGGAGCAGTTCCAGCGCAGTCTCCTCACGCAGTTATTCAGACCACACTTAACAGCACAGAGTCACTCTCTCTAAGCCTCCCCTCCACTAATTTCTACTCCACCCAGCAGCCTATCATTGGTTACTTTGCCGGCACAGGGCACCAGCAGCCTCTCAGCTACCACACCACCTTACCCCAGCACTTGGTCATCCCTGGAACTCAGCCGGTCATCATCCCAGTAAGTGGAACTGAAGCTACCGCTACATCAACTGCTGCACTGCCCCATGCTTTCGTCACCTCAACAGCCCCCAAAGTGGAGACTTTTGAGTCTCCGGCTCCATACCCCCACCCTGCCACAGCTATGGTTCAAGCCCAGTTGCATTTGCCTGTGGTTCCAGCAACTGCTGGCCTGCTGACAACTCCACCCCCACCCTCAGCTCCTTCAATGCCACCCTACTTCACCAAGGGCTCCATCATCCAATTGGCAGATGGGGAACTGAAGCGGGTGGAAGACCTGAAAACAGAGGATTTCATTCAGAGTGCTGAGATTAGCAACGAGCTGAAGATTGATTCCAGCACTGTAGAGCGCATCGACAGCAGTCATACAGCTAACTTTGCTATAATACAGTTTGCTGTAGGAGCGCAACGCTCACAGGTCAGTGTGGAGGTACTAGTAGAGTATCCTTTCTTTGTGTTCGGCCAGGGCTGGTCATCTTGTTGTCCGGATCGGACTACTCAGCTGCTCGAGCTGCCATGCACCAAGCTTTCAGTGGGTGACGTCTGCATCTCCCTCACCCTGAAGAACCTGAGGAACGGTTCCATCAAGAAGAGCCAGGGGCAAGTCTTGGATGCACCTGCACTCGGTCCACCTCTTAAATCACCAAAAGCACTCTCAAGTGGCGCACGAGGGGGTGTTCGGCACACAGAACAGGAAAATGGACTCGGGCAGTGTGCAGATCAAGGAAGTAGAGGCGGTCAAGGCAATAGAGAAAACGGAGAACTGAGGTTTGGTGAAAGGGACAACTGCAAAGCTCCAACACTCACAGAATCAGAGACCAGCAGTAAACCCACAGGTCGAAAAAGAAGGTGGTCCGCCCCTGAGGGTCGTAAAGTAGAAAATCCAGAAGGAGAGCCCCCTTTAACGTTCCCTAAGCCTTCTTTCATCCCTCAGGAGGTTAAAATCAGTATCGAAGGCAGATCAAATATTGGAAAGTGA
>TCONS_00028189
TCCTCTTCCTCTCCGATTTTGTGACTCTGATAAGAACATGTTTTCAGTTTACTATTGGTCACTTCTGACATCTTGCCTGCATGtggtttgcttgttttgttgtttctgaagTGTCAGAATAGCCTGTAAAGTCTCTCTTCTGGAAATCAGCAACACATTCGAATGTAAAAGGACATGTTTTAGCTCACCCACCACAGTAGAGGCAGACTTTGACAAGCTATAACAAATGATCTGTTGGTTATTTTGTGCTAAAATTTTACAGAGGCACGCTCTAGGGACACTTGAGTAATCTATTTGACATCTTATAAAAAAGGGCATAATATATCCCTTTTAAAGAGCACACTCACTGCACACGCTCACTCCGCCTTTGTGTTGTCTTGTTAGTCGGTTTCCATAGAGGTCTGCTCTGTGTTGAGAGCGTCTGAAGGGAGTGGAGCTGCAGGATGACAGAGTTGCACTAGTATGAGTGGAGTAAAAGCACCCGAGTGCACCTGGATCATGTTTGCTCATCGCTTGTTTCATGACCTCATGACGGGACGGGGTTTCAAGGGCTGTGCTGGAGGCCTGCGCTGAAACTACGAGCCGCGTTGGGATTGTAACGACTTCAATGGGCCACAACACTCACTGAAACACTGGAGGCTACTGAATGAGGTTCTTCCTGCAGTCCTGGAGACTCTCTCTCGGAAGGAAATGATTCCACATGAATTGCATGGACCGCTCTCCCGCAGCAGGTGTGACTTCAATTGCTTAAGACTGAAATCTGTGTCAATCCGACCATAGGCACAGGACACATCCCCTCTCACCACCACTCTCCTCTCTACCCCATTCCCATACTTGCTCCAAGCCAATCAGTAGGAGGGCACACTCTGTTAGCAAGACAAACAGAGACCAGGAGGGAGAGGAAAAGAGCCAAAAAAGGGGAAAGAAAAATCCGGAAAGAGTGGTTCAAGATTTTCAGACACCATGAAGTCAAACCAGGAGCGGAGCAATGAATGCCTGCCCCCAAAGAAGCGTGAAATCCCAGCAAGCACTCTGCCCTCAGAGGAGAAGCCCATGGTGATGGCCCCTGCCAATGAGAGCCAGCGTGGAGGGAACCTGGCTTGGCTTGCCAGTCTGGCCAGTGGGCATGACAAAGGCCGGCTGCACACCAGCACGTCTGCAGAATCAGATGGGCCTCAATATAAACCATTGTCAGCCATGGCTGAGAGCACACCTTCCTCGTCCACACACTCAACCAGAGCTCTATCTGCAGTCACCACCATACCTGCAGTGTACACATCACCTCTCTCCCATTCTCCTAGCGCAATCCAGTACACACCCCTCCCTCACAATATACACTTCATCAACCCTCCTTACTCTGCACCATACGCTGGCTACATTTCTCCACTAGCTCCCCCTTTAGCTGCCACCACTACCACACAACGTGAGATTTATGCCAGCTCCTCCAGTTCTCCAGCATCCAAAATTGATCAGCACCACCAATTGGGCCGTCCTCAAGGCCTGGTCACAACTGACAACACCTCTTCACCTCACTCCACTCAATATGTTCAAATTGCTGGTTCTCCACTAAGCATATCCCCTCGAACTGTTTCGTCACCGCATACACACATGCCCCTACATTTACATCCTCACCACACACTTCCCCTTAGCGGCCCTTCACAGGTCTTAGTCCCATACACAGAAAGTCTTTTACCCAAGAGGGAGGAGATGAGGACCAGGGAGTTGCTGAATGGAGAGCTGGAGAAGGACAGACGTTTTGGTCCATCTTCTGAGTCCAGTGCAGGGAAGCAGGGCAGCACTGCCAAAGGGGGTTCCTCTGCCCAGCAGCACCAGATCCACCAGCAGCAGAGCCCACGTCACTTTGAAGCTCGACATGTTGTGCTACCTGCCGAGTACACGCAGGACAGCACAGCCATGAGGACCTCATTGGTGCTGGTACCTAATAATCATAGCTCCACTAGTGCTGATTCTGGAGGTGCATCAGACAAGCTGCCTCCCTCGACATCCCACCATGAAAAAGGAGGGATTTGTGCTGGCAAACCTGTCTCCCGCAGTTCCTCCTTATCTTCCTCCCTTTCATTTGCTCTTCCCCCTCCACCTGTGGACAATCTTAAGGGAGCAGTTCCAGCGCAGTCTCCTCACGCAGTTATTCAGACCACACTTAACAGCACAGAGTCACTCTCTCTAAGCCTCCCCTCCACTAATTTCTACTCCACCCAGCAGCCTATCATTGGTTACTTTGCCGGCACAGGGCACCAGCAGCCTCTCAGCTACCACACCACCTTACCCCAGCACTTGGTCATCCCTGGAACTCAGCCGGTCATCATCCCAGTAAGTGGAACTGAAGCTACCGCTACATCAACTGCTGCACTGCCCCATGCTTTCGTCACCTCAACAGCCCCCAAAGTGGAGACTTTTGAGTCTCCGGCTCCATACCCCCACCCTGCCACAGCTATGGTTCAAGCCCAGTTGCATTTGCCTGTGGTTCCAGCAACTGCTGGCCTGCTGACAACTCCACCCCCACCCTCAGCTCCTTCAATGCCACCCTACTTCACCAAGGGCTCCATCATCCAATTGGCAGATGGGGAACTGAAGCGGGTGGAAGACCTGAAAACAGAGGATTTCATTCAGAGTGCTGAGATTAGCAACGAGCTGAAGATTGATTCCAGCACTGTAGAGCGCATCGACAGCAGTCATACAGCTAACTTTGCTATAATACAGTTTGCTGTAGGAGCGCAACGCTCACAGGTCAGTGTGGAGGTACTAGTAGAGTATCCTTTCTTTGTGTTCGGCCAGGGCTGGTCATCTTGTTGTCCGGATCGGACTACTCAGCTGCTCGAGCTGCCATGCACCAAGCTTTCAGTGGGTGACGTCTGCATCTCCCTCACCCTGAAGAACCTGAGGAACGGTTCCATCAAGAAGAGCCAGGGGCAAGTCTTGGATGCACCTGCACTCGGTCCACCTCTTAAATCACCAAAAGCACTCTCAAGTGGCGCACGAGGGGGTGTTCGGCACACAGAACAGGAAAATGGACTCGGGCAGTGTGCAGATCAAGGAAGTAGAGGCGGTCAAGGCAATAGAGAAAACGGAGAACTGAGGTTTGGTGAAAGGGACAACTGCAAAGCTCCAACACTCACAGAATCAGAGACCAGCAGTAAACCCACAGGTCGAAAAAGAAGGTGGTCCGCCCCTGAGGGTCGTAAAGTAGAAAATCCAGAAGGAGAGCCCCCTTTAACGTTCCCTAAGCCTTCTTTCATCCCTCAGGAGGTTAAAATCAGTATCGAAGGCAGATCAAATATTGGAAAGTGA
>TCONS_00028190
ATGAAGTCAAACCAGGAGCGGAGCAATGAATGCCTGCCCCCAAAGAAGCGTGAAATCCCAGCAAGCACTCTGCCCTCAGAGGAGAAGCCCATGGTGATGGCCCCTGCCAATGAGAGCCAGCGTGGAGGGAACCTGGCTTGGCTTGCCAGTCTGGCCAGTGGGCATGACAAAGGCCGGCTGCACACCAGCACGTCTGCAGAATCAGATGGGCCTCAATATAAACCATTGTCAGCCATGGCTGAGAGCACACCTTCCTCGTCCACACACTCAACCAGAGCTCTATCTGCAGTCACCACCATACCTGCAGTGTACACATCACCTCTCTCCCATTCTCCTAGCGCAATCCAGTACACACCCCTCCCTCACAATATACACTTCATCAACCCTCCTTACTCTGCACCATACGCTGGCTACATTTCTCCACTAGCTCCCCCTTTAGCTGCCACCACTACCACACAACGTGAGATTTATGCCAGCTCCTCCAGTTCTCCAGCATCCAAAATTGATCAGCACCACCAATTGGGCCGTCCTCAAGGCCTGGTCACAACTGACAACACCTCTTCACCTCACTCCACTCAATATGTTCAAATTGCTGGTTCTCCACTAAGCATATCCCCTCGAACTGTTTCGTCACCGCATACACACATGCCCCTACATTTACATCCTCACCACACACTTCCCCTTAGCGGCCCTTCACAGGTCTTAGTCCCATACACAGAAAGTCTTTTACCCAAGAGGGAGGAGATGAGGACCAGGGAGTTGCTGAATGGAGAGCTGGAGAAGGACAGACGTTTTGGTCCATCTTCTGAGTCCAGTGCAGGGAAGCAGGGCAGCACTGCCAAAGGGGGTTCCTCTGCCCAGCAGCACCAGATCCACCAGCAGCAGAGCCCACGTCACTTTGAAGCTCGACATGTTGTGCTACCTGCCGAGTACACGCAGGACAGCACAGCCATGAGGACCTCATTGGTGCTGGTACCTAATAATCATAGCTCCACTAGTGCTGATTCTGGAGGTGCATCAGACAAGCTGCCTCCCTCGACATCCCACCATGAAAAAGGAGGGATTTGTGCTGGCAAACCTGTCTCCCGCAGTTCCTCCTTATCTTCCTCCCTTTCATTTGCTCTTCCCCCTCCACCTGTGGACAATCTTAAGGGAGCAGTTCCAGCGCAGTCTCCTCACGCAGTTATTCAGACCACACTTAACAGCACAGAGTCACTCTCTCTAAGCCTCCCCTCCACTAATTTCTACTCCACCCAGCAGCCTATCATTGGTTACTTTGCCGGCACAGGGCACCAGCAGCCTCTCAGCTACCACACCACCTTACCCCAGCACTTGGTCATCCCTGGAACTCAGCCGGTCATCATCCCAGTAAGTGGAACTGAAGCTACCGCTACATCAACTGCTGCACTGCCCCATGCTTTCGTCACCTCAACAGCCCCCAAAGTGGAGACTTTTGAGTCTCCGGCTCCATACCCCCACCCTGCCACAGCTATGGTTCAAGCCCAGTTGCATTTGCCTGTGGTTCCAGCAACTGCTGGCCTGCTGACAACTCCACCCCCACCCTCAGCTCCTTCAATGCCACCCTACTTCACCAAGGGCTCCATCATCCAATTGGCAGATGGGGAACTGAAGCGGGTGGAAGACCTGAAAACAGAGGATTTCATTCAGAGTGCTGAGATTAGCAACGAGCTGAAGATTGATTCCAGCACTGTAGAGCGCATCGACAGCAGTCATACAGCTAACTTTGCTATAATACAGTTTGCTGTAGGAGCGCAACGCTCACAGGTCAGTGTGGAGGTACTAGTAGAGTATCCTTTCTTTGTGTTCGGCCAGGGCTGGTCATCTTGTTGTCCGGATCGGACTACTCAGCTGCTCGAGCTGCCATGCACCAAGCTTTCAGTGGGTGACGTCTGCATCTCCCTCACCCTGAAGAACCTGAGGAACGGTTCCATCAAGAAGAGCCAGGGGCAAGTCTTGGATGCACCTGCACTCGGTCCACCTCTTAAATCACCAAAAGCACTCTCAAGTGGCGCACGAGGGGGTGTTCGGCACACAGAACAGGAAAATGGACTCGGGCAGTGTGCAGATCAAGGAAGTAGAGGCGGTCAAGGCAATAGAGAAAACGGAGAACTGAGGTTTGGTGAAAGGGACAACTGCAAAGCTCCAACACTCACAGAATCAGAGACCAGCAGTAAACCCACAGGTCGAAAAAGAAGGTGGTCCGCCCCTGAGGGTCGTAAAGTAGAAAATCCAGAAGGAGAGCCCCCTTTAACGTTCCCTAAGCCTTCTTTCATCCCTCAGGAGGTTAAAATCAGTATCGAAGGCAGATCAAATATTGGAAAGTGA

Function

symbol description
atxn1a Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and nervous system development. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Located in nucleus. Is expressed in cerebellum. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 1. Orthologous to human ATXN1 (ataxin 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048856 anatomical structure development biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-759 Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and nervous system development. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Located in nucleus. Is expressed in cerebellum. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 1. Orthologous to human ATXN1 (ataxin 1).

Ensembl:

ensembl_id ENSDARG00000061687

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028187 False 2995 mRNA 0.52 4 32257472 32461596
TCONS_00029969 False 316 lncRNA 0.50 3 32257615 32368512
TCONS_00028188 False 2949 mRNA 0.52 4 32321797 32461596
TCONS_00028189 False 3309 mRNA 0.51 4 32401278 32461596
TCONS_00028190 True 2346 mRNA 0.53 2 32456974 32461596

Neighbor

gene id symbol gene type direction distance location
XLOC_014154 fam8a1a coding upstream 50653 32201991 ~ 32206819 (+)
XLOC_014153 fabp11a coding upstream 88311 32166702 ~ 32169161 (+)
XLOC_014152 mrpl53 coding upstream 92940 32158010 ~ 32164532 (+)
XLOC_014151 BX119962.1 coding upstream 198873 32058477 ~ 32058599 (+)
XLOC_014150 NA coding upstream 287706 31954959 ~ 31969766 (+)
XLOC_014156 heyl coding downstream 92278 32553874 ~ 32560591 (+)
XLOC_014157 tmem54b coding downstream 142031 32603627 ~ 32619257 (+)
XLOC_014158 NA coding downstream 254982 32716578 ~ 32718796 (+)
XLOC_014159 NA coding downstream 303687 32765283 ~ 32780918 (+)
XLOC_014160 stk3 coding downstream 345640 32807236 ~ 32820107 (+)
XLOC_014149 NA non-coding upstream 302744 31943508 ~ 31954728 (+)
XLOC_014146 NA non-coding upstream 397932 31800505 ~ 31859540 (+)
XLOC_014144 BX957279.1 non-coding upstream 665932 31591524 ~ 31591540 (+)
XLOC_014169 NA non-coding downstream 1334152 33795748 ~ 33798410 (+)
XLOC_014171 dre-mir-187 non-coding downstream 1674011 34135607 ~ 34135695 (+)
XLOC_014173 BX649545.1 non-coding downstream 1745566 34207162 ~ 34207280 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07228008_07231489 ATXN1A, ATXN1 coding CI01000054 null 7227594 ~ 7231489 (-)